Scaffold Ga0326728_10004353

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10004353
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42074
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (90.48%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F004817	Metagenome	422	Y
F007120	Metagenome	357	Y
F015428	Metagenome	254	Y
F019075	Metagenome	231	Y
F057060	Metagenome	136	Y
F082025	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000435314	F007120	AGGAGG	MKTLIIVLSAACAAVAYYFGLRYFSGRDLGFTPARKYVQSLAKNLLHTELTAAREAGTTPQATTQQAA
Ga0326728_1000435315	F002761	AGGAGG	MTFTPSATSSFSAGAVFWGMVWATLGKLNELAHFVGFKKAHPRQTVLRWINTHKVVTITLTEAVNYSVHGISSPLGVTFALGGTLVNLCMVTFIVPIWCRLSKLESH
Ga0326728_1000435317	F015428	AGGAGG	LTGILELFALVEMGSGIGFLVRWRNRLLASKVNYFRPPHNRKSPFDKLVRSETGPVITRQDRLSVKLADGLTALVRRLVMLDAFRQLMRALALPNSPLRRRLRGPRRLL
Ga0326728_1000435318	F003859	AGGAG	MEEQNTPKDASLERTSIPGSSWPGASLYKSLKLGWHWRRLRWAVVAASEAAQGHEANGLPPGSKEFKTLFDEVVRNVQEYSTESGDPLNTLQARLPALCALERLAYPAPTVPRNKAGLTVGIFMAALLGSLGIGALIGLGAGMAHWIARLFG
Ga0326728_1000435319	F004817	AGGA	MPKTIAVVKLPEILGSGSSHLVKLAGKIDSFSLLLRQTPEGELKRSIEVQFHSMVFATRKEIRKYCPRYRSLPGEGILDFNTDCTSGQLEPGDVGQAPPPKRGRLCGKCCFFAGIPEEQLPGTTVSAAPQDLVPVA
Ga0326728_1000435321	F057060	AGGAGG	LNYQLHYQFPAEPFQRWHVIEDRSLPHPLHFRHPCKPAEKPDPKVNFGVSELSARLEHAGVEYIRIALGNDAKSFDWAFCMISGALRGVEVPGDGHWYPVIPWVRDDGFYAVAMREPMPFRDACHLFGFDIPAGKPSVPKRIKRDVARGKTSLFGELLETRELNRWDLLHTVMLADGKTTFEVATYNPGNRWPDAWTSGAALASPRGGAILTGHPVQVGDLIQITGAMPNGQIKANCLIWDIEHDLVVWDVKQELRAWQGQIYLSVLNELHGGPAHLDVQTASNLDLAKVRDHKLIRYLCQEYACDVFDLMRDDERVKEEIGFYNPSSWSDEDGNPVMNENRWKLWRMYAAGLPAMQFRHCRDAFYRTQMESPENTDPDRFRIRFREPQDLMTVKADELAGAAVRRYLFPEPFVFDKQGYPHWERSTLPDVDSVYLGGFEGEFISLRNPNASHRESGKLRGRRLQRFAGIDRGAVMFVHLGFAASPEGTPGMAKSFNGADFDDSVLALLDPEIVKHWKTLPEYPWVVATPTEVKVIDDGDALFDRHPKVQEYDDYYVTCMLNDAKRGQTGIGYVVNAITWFNLLWLNRESIVAELRQMQPSSQVAAAIRWMEEELPGSRMPMVASRLEEIIDAIKLNGSSINWASGVITEFRNTCPVAPKFWWQGGYQGQGRIPRDRIENGNAPIPVTTAMDAAREEWIQLFQKARQFADKESWKRCWRVPPEIRSFPTRPEAAPAARDFWLFYNRTREAKKAEFLKAGKDHRGRKVTSEQEAGIAAYLYAEEEVHNRIKASGMYLEIYAELVKLVFDRGMTLEPPRNPDGTVKPVADGILGGPHTLDGLLDIARAAGVTRRYVPLTWESERVRADYGDLNLDIIVEDTLVRMAGSTPNPASWIGIVDLPDGQHRLEHGLVVTEDTSEGPPQGPAVALLAVNGFEQRLRDERLKQEDRQLIEAELKAFHAQVCNGVTIKPVTYRNPETEEDEASAEVFLEGASEPLGWISREHVPLVRSELTGVLVSGGPYTLKVLCPLPEQGAHS
Ga0326728_1000435322	F019075	AGGAGG	LRYFQPKRALIAREIRDERRRELDAMLSQLPHRVPAPSPLSLEAQFQRSIVDIRQDVQRAKDVQTAHILRWLQS
Ga0326728_1000435323	F082025	GGAGG	MDSNTIFTSLFGGCLNAADKAAAAAINYSKSTTVPGVRKLSRKASLATGRTLVHVGSKLTDYCTEK