Scaffold Ga0326728

Basic Information
Taxon OID	3300033402 Open in IMG/M
Scaffold ID	Ga0326728_10004190 Open in IMG/M
Source Dataset Name	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033402 Open in IMG/M

Scaffold ID

Ga0326728_10004190 Open in IMG/M

Source Dataset Name

Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	43249
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (78.12%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

43249

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (78.12%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.5488	Long. (^o)	-76.2662	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: New York

Coordinates

Lat. (^o)

42.5488

Long. (^o)

-76.2662

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000335	Metagenome / Metatranscriptome	1276	Y
F000451	Metagenome / Metatranscriptome	1124	Y
F002261	Metagenome / Metatranscriptome	577	Y
F003186	Metagenome / Metatranscriptome	502	N
F015314	Metagenome / Metatranscriptome	255	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000419016	F000335	GGTGG	MPGNLVQSAPNGVMPASLCTAFTELREYVQLQNQFHDGTIQRSQLAQTSRRTFRLGKRLSASLLTALYNFWVSQDAGLTPFAFYNPFDVASGQQIGSNYDPTGNNTQGRVTVVFRGNWAQATDIARTNLQSLELVEVA
Ga0326728_1000419018	F000451	AGG	MAKFQTVIKHARFVYSPYTATEMQGFAQVLADSIRQRIQAGQNIYDQAAAPLKPGLPGRRGYPDYKSARGLRPVRDWTWSGHTLRCLKVLTANENRAAIGFLDEALPGRRMTASQIAAFNNRREAQWGVSPHDRHAVLAAFQARPFVMLKAA
Ga0326728_1000419024	F003186	N/A	MINPKTILGEWVTAFQSCPDLVTAIGGDVGNVRAFMEGLATDNNLRLAILQMPPGSMLVAWNGTTPRRLTGGALHFAHRFSIYLRAPEQNSTATYADLFWLLVSAIPTGAPSWASLLHFQIDPDCYPMDMDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE
Ga0326728_1000419025	F002261	GGA	MPNWPSIEAFVDGVVAQTFGESVVYQPVQAGAAQGSAFTVTAVRHLRPRDESGATASFEEISVNPSDFENPPAKGDWVTAWGAQYVVTTVRQPDAYGMLNLALLQRS
Ga0326728_1000419028	F015314	GGCGG	MMLRRESWARLTRGLVPPLYVLRPLQGFTPSDIGDEYPTPDAANKVQLTRARQLYEQRRIGTQAEAERALSGLPKQEPAKPGKEKRHGSQSGKNAR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0326728_10004190

Overview

Ecosystem & Geography

Associated Families

Sequences