Scaffold Ga0326728_10003912

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10003912
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 45111
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (82.61%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000250	Metagenome / Metatranscriptome	1458	Y
F002889	Metagenome / Metatranscriptome	523	Y
F063274	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000391226	F000250	GGAGG	MRIHSATTITGAVLTTLLLAFAAFAHDHSALNGTWTLVPTKSDFAGQPVVQTGSVTINERQGVITVSRSFVYEGAAETFFYRDITDAENNATIHTGKDLKSKTSWDHDVLKVTTTEYGAITLERYTLAADGTMVVSVVKPDHKPITLVFQHKDD
Ga0326728_1000391240	F002889	GAGG	MNRNARIFCFLVLTLAALGGCSSGPPANESKKAGTAPDRIQGKVQLQDSGGATDAAMNAGGPSVYLKEGDRRYRLFLRTAVEVADGKEYVAEGVYAQKAIDEIGDPDQGKNGYPLQSSCERVIKTAWSGLAFDEFDADTSLLSAKLKRYPARPIFLVTRIRPATPADSGAASAEPKKDVAVEGEDVREVPVAADKQRAFLIASPAVQTAPLWEPAGGTVRCKVVIGPDGKISELETGVQLCEAVAWSQFRYQPPVQGGHPVKVSTEVEVRFEPRK
Ga0326728_1000391242	F063274	GAG	MSPLDSQIAALKSRRRSMMEFNPWKPSPFYYLYVPIGALLVYFLTGPPWWGVGKLVATGLCFVLLCYLPVIYNRLRFWLFFLWPNKRLQRRIGSLEAQLDRRSGQDS