Scaffold Ga0326728

Basic Information
Taxon OID	3300033402 Open in IMG/M
Scaffold ID	Ga0326728_10002087 Open in IMG/M
Source Dataset Name	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033402 Open in IMG/M

Scaffold ID

Ga0326728_10002087 Open in IMG/M

Source Dataset Name

Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	67973
Total Scaffold Genes	69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	50 (72.46%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

67973

Total Scaffold Genes

69 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

50 (72.46%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.5488	Long. (^o)	-76.2662	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: New York

Coordinates

Lat. (^o)

42.5488

Long. (^o)

-76.2662

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007294	Metagenome / Metatranscriptome	353	Y
F025048	Metagenome	203	Y
F030458	Metagenome	185	Y
F031889	Metagenome / Metatranscriptome	181	Y
F041367	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000208756	F007294	GGCGG	MALTVQQLQANLDAVTQAIGGPTLKVRFPDGREVTYRSVDELLKAKAAIEEDIRRTSGQTGSRVRFAQHQRGDGPTGPTLSDRW
Ga0326728_1000208762	F025048	AGTAGG	MLNASPITDAIAATLACIPDLFTAMAVTNAIGDLECRISAFHYRLGQEHQLAAAIYKMPAPSMLVAWDGTQGGNFDGQTIWKHRFHVYFRMGNAAGLDYPVGYEDLWWTVCNRPPTGSPVNIRYMTLYPGLDIMDTPSMAHALDEDQVDRFVGTFVIPEIGDQ
Ga0326728_1000208765	F031889	AGGAG	MYGDIPAEGIAIRVPNPPKTALVRLPTNQEMLERLDRQKSIRRTIGRRKSQTEFVPNEKADLDLFVKIRLDKGAEFDEYEAANAISKLTYCEVTGCQRAGDEYRITVKTPFGATIHSVEIPTQRDITFYRRAVMSATDLPHGQEELRYRMEPAVALYDSVASKIEGYAASFKPADVPPHHKSAVVLELVQAIDELDPALDPNS
Ga0326728_1000208766	F041367	N/A	VRAHELCDGGEEGPRGCPDANEVTCQVCGATCEVEDTAAPGECPQCGSRQFAVNRCARCPVNELEYVRAHSAAGRLFERMLELEFDCAHFAVPWGEVTAAEVKGLQVLQDERERYQRERQREKQPNAFPS
Ga0326728_1000208767	F030458	GAG	MPFQAKITRARFVLGPFTAEDMQTIGGVLVDSISGRIRKAVNVNDDPAKVLKPGRNGRRGYPDYKAARGLQPIRDWVWTGRTMRSLKVKSANENRVVVGFVDPNADRVAHVNNLRERQFGVSPKDRSALNAIVLAILKRARVVRVVRAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0326728_10002087

Overview

Ecosystem & Geography

Associated Families

Sequences