Scaffold Ga0326728_10001770

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10001770
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 74567
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (73.24%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017431	Metagenome	240	Y
F019267	Metagenome / Metatranscriptome	230	Y
F022798	Metagenome	212	Y
F023263	Metagenome	210	Y
F040975	Metagenome	160	Y
F041547	Metagenome	159	Y
F041548	Metagenome	159	Y
F049380	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000177016	F022798	AGGA	MSYTTVTQVAGMFPTFTRNGPKGPSDTLIQNYIDDVAGEIDAILQRRFQEAYASPGFTAWQASFSTDQLNLLEKINRYGACAQLAEVFETSGIAAAARVAKGFEDEYRELCNKLNARNADGKPLAQGGDYDYLFDPLAKVETPRPQLGGVAGGDQYPSETSSEDSTNVFKKWDRREF
Ga0326728_1000177017	F019267	GGAGG	MSASATFTTLYSFREERRRLYRHIRVDITGLASGANTIPHGITERENPAIGATPIDEQVLLTSSVAVHRTQAADAANLYYTVDSGSGTTISVYVTV
Ga0326728_1000177020	F023263	AGGAGG	MLGNQGLTAAKFDTNIRALRGTVMSLPVSNPSTESDFYVGLPSGFNVVPTGVLSQDVVEPGYPLTSELWLDPTTNNPINGSTPPAPFVSQGRAWGLIISAAEAEVIAADTTIQAEDDVVIADAYGRVTSIRNVTTGNTAYMVGKAKYPPTAANQKIRIQVSLRQTKV
Ga0326728_1000177030	F017431	AGGCGG	MSKVTTKSEQEFDRTEILRYLNECGLQPVTPKSILIYLDDCLRPVSLPGVEFHLRYMRDRGWVELGIEKKVGLPEVIRWTRITANGVDEYDRRCAALGEAR
Ga0326728_1000177031	F041547	GAGG	MISANEIQALLLGAGGFIGTSMAGVGAYRLFAAATRGVMRVPLSLEKGADSLERVVQAVETQNGVTNQVMELKGLLMATREEILKMMNEREQIGRELRLMSRKIEAFSCYVQEE
Ga0326728_1000177032	F041548	AGGA	MDTNSLQVQALITFITPFLLQLAKRSQSAAFAWIDQNKPKVCVLASAVTALLTSMGIEFVHVPHSLTVTWPDSATLARGLATFLVSAVLQFAAQHALYEGLWRHVVPAKEARS
Ga0326728_1000177060	F049380	N/A	MVHPGGHSMCNVYLILAYGLLWGIFTLYAWVIQGRQQRLEKELEELKKALRQR
Ga0326728_100017709	F040975	GAG	MINGNQTWQTGLSAPQKQPLYVLQIPQFGIVLASFTQSTIQSLTTSGYGVMTWGIGGWGT