Scaffold Ga0326728_10001732

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10001732
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 75774
• Total Scaffold Genes: 86
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (36.05%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042481	Metagenome / Metatranscriptome	158	N
F044275	Metagenome	154	Y
F045503	Metagenome / Metatranscriptome	152	N
F046149	Metagenome	151	Y
F052751	Metagenome	142	N
F061699	Metagenome	131	N
F076810	Metagenome	117	N
F084004	Metagenome	112	N
F098523	Metagenome	103	N
F098576	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_100017321	F084004	N/A	GNDSLEFVYNGFITRFAEGNSAWKTEITLGADLNKPPPPPYRLQYHDSLGYYTYRPKHWSELNDYEQFALRNDPRLPDFVREHALSLRNGQWSALAAASKAKPLVPVAGDALSVDSQNAGVLTPEGENRWGYRFEPGDLLNSKPLRLVEVAP
Ga0326728_1000173210	F042481	N/A	MNRPLFAFFSALTLLTFLLERYASWFAPGCPATQVVGLGTLRILFFAFFAIQMLLPFYHWAKDPNFTTDTASGFVLFVSIVSAVLAFFIYNVPLVALNALVRLAQLCTNS
Ga0326728_1000173221	F098576	N/A	VKEARHFVVTHSHRHGVTTGLVIGGKGQKQPTPAEAIKLLQLDYEPEREEFVEVTEVAPVLLTKPRRHRQMTGGQRARLIAQWARRLYDITASWQGPIGMQLAYLFAAMARGSHVALNRRSALVRLLRQEAVPASDPIWRYIRIEE
Ga0326728_1000173222	F045503	GGA	MKVKLPRPAPGNQRVREIQQWLGAYGGSVANAYVVNAGALRELGAERGILEKILWRVPREKPELPLTGEAMMELLAPKRLMREVRKQLKLDTQSHQAHTRAFEQSRQQLIASKVPASAQDREGVIREVESWFKRVLPEMRDTQAILRATELRLEAGRDIHPVLPPLRATTELVEQLNKREPGRVYIDKDGGELLLLKPGEQAVLSEKGLRIENGAPALPAPEMN
Ga0326728_1000173223	F098523	AGG	VPYGVKLKIVDLDRLKGALQEARVAFTERLVPHTNPAMIALVVQRAGYSLSVTPTLYYHGPVVEIRPNGGPRISFRSSKDPAELVAVMDTFVQVRKWTTRLQPKWATRQLALITGSSPGSPVLVYEPCCARLAIIPRPASFNQLHKHSPVKKYKLGASPKLIAADLVQLHHQNTPKRSWESFVEDWNCQHSASFGHQLTLSASYIYAWNGMRFLMDGDDLSMDVWGPVFSVAFPEAIRLLESIQAVLGKIVTGRGNEEGPPREADPV
Ga0326728_100017325	F052751	N/A	MFTRRPSDQSWIKYLLSTGLVTVDQLERMRANQNQMDVGELLVRNAPLFEPGLWLNQALQQDRFHYIPVNALDARELAELQQLQPSLISCCLSEGILPLGFSHQTLYLGLLRYDPEFPELKEILRSIPAELRVCLVPVAPSDYAKLNQSLRGAATP
Ga0326728_1000173270	F061699	GGAGG	MVVSAPKQPRVFLTAHDAAGSVRGKWQEWRAAGVWLSKFHKPGTAFALPFDPDDYLWAGPVTLKLEIPEGRELYYRRGHYRRGVRKYLNQLKRGEKLPPVVLLYHEAWDWTMQDGNHRMEALITHRAPTYEAFLGKPKRRKPIDKF
Ga0326728_1000173277	F076810	GGTGG	MPGTPTPLAITLQRQGISASLRTQPHALMTPGPGNSNPGFSLVLQAAPSGTAWYLDLAIDGKHEKVFANGCGDQSWWYGRNVCRERPELFTNLEVAKRAAEVELGKRLNRPVHIRPHVELYCPCEAPFYDYLESDVEFARARYDAQTDSIRSVPDGRCLLSWPKNDLLHPRFHRPADGAHIPAGCRWQSICPKAHQEFLKTHNQRPGLERAKRWLAWLISEYRKYGLDS
Ga0326728_1000173279	F044275	N/A	MADRFPIRYEIGGNITTAVLDRLIRQLLDVQMTREYGGCDDEESLHKEVERISGTSSLQVCNNDLAPYLTEELDLFLMEHKLPFVKRTDARHEYDSQIEWWRPGMQHLGKWEFTNTEANAIHISLESLKKALEQHKTLRQVVAALERVAPDPGPVILLAPTSKKRGTGRRVRSSNNDTNKTDALQQTKG
Ga0326728_1000173280	F046149	N/A	LAPELADLAPPVSTGRSSPSLPPSASAAWICESCRKDWTGLPRETGLIYGKHKRMSKQILLNQAVLEFHGPDNLPGGITQALEKKLDRADWTELLQPVLQGIPAKIRVVDVSGPGRMGKKPAKTGRSRKKGTFCVEITRIGYGSKTFEISDVTAAEAESIALEQAGNHEFTEANSEYEVLSVREKS