Scaffold Ga0326728_10001452

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10001452
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 83353
• Total Scaffold Genes: 76
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (82.89%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F005112	Metagenome / Metatranscriptome	411	Y
F016632	Metagenome / Metatranscriptome	245	Y
F019075	Metagenome	231	Y
F022840	Metagenome	212	Y
F028392	Metagenome	191	Y
F039911	Metagenome / Metatranscriptome	162	Y
F057060	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000145240	F019075	GGAGG	LRCFQPERALIAREIREERQRELDTVLSQIAYGRIIRLPSPSLSLEAQFQISVSKMREDVQRAKDVQTTHILRWLRS
Ga0326728_1000145241	F057060	AGGAGG	MPKHEELYFTPHLDKPHQKWSILEDPECPSDGTIRRHYRQPREKPDVKQSFGISEVSPVLEYYAARAGIEYSRVSLGRQTFSFDLALALLRSPLGMETSDGQVWRPVIPWVRDDGFCAVLMREAIPYQEACHVFGFDIPAAKPSVPKRIKRHLARGRTALFGKEAEIRQLNQYDRVHEAILADGATSFSTAVYDPGPRWPEAWTSGAALASRRGGALLTGHPVQIGDLIQITGALPTGQIKANCLIWDIDYDLVVFDIKKELRSWNGEVYLSVLNELHGSPANLDVQTASNLDLAKVRDGKLIQYLSQEFARDVFELMRDDERVKEEIGFYNPEGWVNDDGNPVMNENRWKLWRIYAAGLPAMQFRHCRDAFYRTQMESPQNSNPDRFRIRFREPKDLMTVQPQELAGAAVRRYIFPEPFVFDRQGYPHWERSTLPDVNSVYLGGFEGEFISLRNPNASHKESGKLRGRRLQRFAEIDRGAVMFVHLGFAASPDGTPGLGKSFNGADFDDSVLALLDPEIAAHWKTLQDYPLLQAAPTQAMVIDDGDALFDRHPEVERYDTLFVERMIVDARHGQMGIGCVVNAIVWFNLLWLNRESIVAQLRAMEPSSKVVEAIHWMEHDLPKSQMPMIASRLEEIIDSIKMNGKSVEWASAAITEFRNTCPVAPKFWWQGGFQGEGRIPRHRLGNCNEPIAVTTAMDTAHEEWIEIFKKARKFADKESWKRCWRVPLEIRTFPTRPEAATAARDFWHFYNRTREAKKAEFLLAGKDHRGKKVTTEQDAGLAAYLFAEEDVHNRIKASGMYQEIYAELVKLVFDRELTLEPPRNPDGSVKPVADGILGGPHTLDGFLDMARAAGATRKYVPITWESDRVRADYGHLNLDVVVEDTLVRMAGTTANPANWLGIVDVPDGQYRLEHGLLATEDDSDAPSPPATVALPAVNGFEQRLKDMTLKQQDRQRIEAELKLFQSQVGQRVTIKPVTYHNPKTRQDEPAAEVFLEGNREPLCWISREHVAAVTHELSGILVSNGKYSLTAVCTLPEQGIHS
Ga0326728_1000145243	F028392	AGGA	MPKTVAVVKLPEILRNGSSHLVKLAGKIDSFSLVLWQTPESQLKRQIEKDYHAMVFTARKEVRKYCPKYRHLPGEGILDFSTDCASGQLEAGDLGKPPRPKRGRLCHQCCFFLGEPEEQSPGITLSETLEALVPVT
Ga0326728_1000145244	F003859	AGGAG	MEEFTTKKGSTAEGVRVADYLLPVTSLYQSIKLGWKWRHLKWAVAAASEAAQGHEANGVRPGAQEFKTLYNEVAKKVQAYSHESRIPIDTLKAKLPALCAIERLANPDAAVPQNRLGLTLGVVIASVLGSIGIGVLIGLGAGMAHWIAHLFA
Ga0326728_1000145245	F016632	AGGAGG	LTGILEMFALAEIGSGIGFLAGWRNKVLKAKVKYFRQPNSRPSPFDKLLRAKVGRAFTRQDRLRLQLADGLVNVIRKLVQYEAFRQVVRGLALAHSPMRQALRKKGGRSS
Ga0326728_1000145248	F002761	AGGTGG	MVFTPSSTGSFTAGAVFWSMVWAGLGKLNELAKFVGFKKARPRESALRWINSHKVIALTTTEVVNYSVHGISSPLGVTFALGGTIVNTLMVAFVVPIWCRLTRLESRL
Ga0326728_1000145251	F039911	AGGAG	MKYTIAALLAVVAIAGYFGIRHLARKDLGFTPAKRYATKLANTLTHTEATAAQEAGVSPA
Ga0326728_1000145252	F005112	AGGAG	MSLVAKYKLFWAACVGALCGVAFWKNSKSYPRKSRLWRLGKSVIDTGLVLLMVLYAPALLLMYVVIWLTSPFKNRIMQSTAAFASILAVSHLAGIVFEAVAVFGVFAVDLLTGQVVVRMDKRERNKLAKAA
Ga0326728_1000145262	F022840	GGAGG	MQDQTITITIDEQGHSTLDLEGFAGRSCEKVFEDFRGGDRVKIERKKPAYYTGQQVQQEKSQR