Scaffold Ga0326728_10001385

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10001385
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 86087
• Total Scaffold Genes: 97
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 85 (87.63%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001969	Metagenome / Metatranscriptome	609	Y
F011574	Metagenome / Metatranscriptome	289	Y
F011989	Metagenome	284	Y
F022139	Metagenome / Metatranscriptome	215	Y
F027097	Metagenome / Metatranscriptome	195	Y
F027391	Metagenome	194	Y
F098282	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000138515	F011989	GGAGG	VTPVGDIEIEIVFRIAVRGRTSDLAHLLQAMNKAEAVVISIVEEPAPAEEQSQSGVAATAGGFSE
Ga0326728_1000138520	F098282	GGAGG	VIWQYLIEGPWIVFCAYWAVSALKTRRTVSAESLASRARFILLEIVGYGLVFSDLAAIGVLGHRVLHRTYALAAIGVAFTWIGFKCRDYRLAPRQFT
Ga0326728_1000138556	F027391	N/A	MTQVFTQSEVRSLLRGYLKDRPDLGLGKAALGMVLEPANPFEPEAARPPRKAFVLAVFCLLALLGVFVYFNLWSCP
Ga0326728_1000138560	F011574	AGG	MGQQLARGNLAHKKIGGPLVRASRQEGGLSMATGIGVEEAKGTQPVARTPRRRSTLEEQAPAGSVRFFLAKAGANGTIPSLDREIATEGEAKVESLKTGLNYYSLIEWRAAADLAGKNPQVRSEPVKR
Ga0326728_1000138589	F022139	AGG	MKGQGNENDGPGLSGATTLTDSKRDPVVWTPELNAIILDGYSRGWLGAREAINKIQRLHPKWRSHHVWERAKELGFDQSFVQECPPWSASDDAYLLDFAQEQSVQTMARVLHRSERTVRWRLAKLGASCKVQDNYSQEDLARDLRVSPRTVRRWETVGFLERREGRITHESLQEFCRKHASEINYDALDREMQRWLKDCVGFIPAQKQPKNGYGNLKHLEKFGVCPWCGRKTRGNANGRHVEACARKNGSNKSLRVLGNYEAAAV
Ga0326728_1000138591	F027097	AGG	MSGDFEPDTPVWIWQPEDSGTAVESDLLDAGRRNWPRVISYARRYEQDSSVAANILEAVLLATSRVKIARRKSGNPIRNLDTYVYVAFLRKFKRYLARQPKIQFVGSLQDVDTLSDIRSSKGPPAVEHDLLAKELLQHMSQRTRQTFFLRTNGYSWKETARFLKTTANSAQVLFNKEIGKLRSHIMKQKGSGMRPGEGGEIDE
Ga0326728_1000138596	F001969	AGG	MQASLENIRQFILDLDERDYLEFLYPSDPDFTEELEALNTEAKEMLETLRDIEGTLRGLD