Scaffold Ga0326728_10001239

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10001239
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 91517
• Total Scaffold Genes: 85
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (42.35%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050854	Metagenome	144	N
F069182	Metagenome	124	N
F069964	Metagenome	123	N
F076776	Metagenome	117	N
F092530	Metagenome	107	N
F098524	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000123929	F092530	GAG	MSRPRRISFWETAGLLSLGAITVVCLMPALRKDYAQSHWRTSLFAMIGACLIYPPAILVYTRKAIAQRNGDWKTTIFILGITYVLFRMVR
Ga0326728_1000123938	F069964	N/A	MDIRQLREEKPKLGWLAEVRFSIFHNHRKLEELEPPVSAHLKANGPVKVVTRANLFEFTPDGDRVNLVIREGRKLDGLPYQTAPEAVQLFCNEAITLHKNQHLFWHLTEDEIRQVATEFQDLAGLSGIHVKKGRHALLLQIQDGRLDLSVCDNC
Ga0326728_1000123939	F076776	N/A	VKLQQNQSRVPLQLRQSLVAEVRASLKPGMEFNALYGQLLSRLEGVENPSMEQAKALLRNPEILLAEREQKQAAAVKAQTQLKAQIVNANIPKQAPDREQLVADTLAFVDRFPTLNAAEVKRVTILRQTNGNRDLRAVPFSAIASPESLAENLDCSQKLDDGNGKAGVHFSTSCQTFFLQENELLPSEKSPVAFPSLVEIS
Ga0326728_1000123962	F050854	AGG	MDDLLTLAIGKLADHYQVSEDYLKRALLLRAVAELNAVTDRSKPATPEQLEVILTNLNRQLNEVLEGFRRQIVEADHAVQSAHIAITVVERVAGVLRGQMAGVPLQATGSR
Ga0326728_1000123963	F098524	GGAG	VTYHLKTPYNGDMTEGDDDEKQFEKTLLEAGKPAAGAVIEAGVKESPSGSAMAPEGGGTEEESDTEEPGVDPIQTLLNRRYPRLALHRDTLRLLQRVEWMNRNQGVNDFCNDAIRYVILAREAGTTSFNDLQAVSAAIDARLDELSVILLRLHQAAGDLSIIVEHQKLIGAYGERLRKAAITGA
Ga0326728_1000123984	F069182	N/A	MSTIHAQHIEAARQEFFVRVLRAPCCNVFFKPARWETWRVLGETAEGALRIAKYHFYRSTRIELAGAGALTVT