Scaffold Ga0326728

Basic Information
Taxon OID	3300033402 Open in IMG/M
Scaffold ID	Ga0326728_10001211 Open in IMG/M
Source Dataset Name	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033402 Open in IMG/M

Scaffold ID

Ga0326728_10001211 Open in IMG/M

Source Dataset Name

Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	92458
Total Scaffold Genes	77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	65 (84.42%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

92458

Total Scaffold Genes

77 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

65 (84.42%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location Name	USA: New York
Coordinates	Lat. (^o)	42.5488	Long. (^o)	-76.2662	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: New York

Coordinates

Lat. (^o)

42.5488

Long. (^o)

-76.2662

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019267	Metagenome / Metatranscriptome	230	Y
F022798	Metagenome	212	Y
F023263	Metagenome	210	Y
F040975	Metagenome	160	Y
F048047	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000121111	F048047	AGGAG	MSGNGIAKASDFRAAVERSNVEHVVLPASGLAVLLCRPPVFAALAMGRAGTQLQAKITDAKPEEIKTEDIEAFTQWLSETLARLFVQPRFAAAPQGDEIGLADILIEDLKFIFRWLRGEVFSAEGGTGVPPVTHGQDGHATLATEDLGRFPPRQRAASVPGGSGEAQPVPSERTPGTHRDAGLSARLHGG
Ga0326728_1000121114	F040975	GGA	MILGNQTWQSGLTSPQKQPLYILQIPQFGIVLASFTQSQIQSLTQTGFGVMTWGIGGWGT
Ga0326728_100012114	F023263	AGGAG	MLGTEGLTAAKFDTNIRALRGTVMGLPVTNLSTESDFYVGLPSGANVQPVGVLAQDVVEPGYPLTAELWLDPNTGNPINGTVPPSPFVSQGRAWGLITAASEAEVIAADTTIQADDLVYIADAYGRVTSIRNGSVGTMYYCVGRAKYPSTAINQRLRITVTLQQVKL
Ga0326728_100012117	F019267	GGAGG	MAASATYTTLYTFRLDRRQLVRRIRVDITGLASGANTVAHGIAAPNNQSVGQTPKDELVLLTSSVAVHRTQSADATNLYYTVDSGSGTTISVYVTV
Ga0326728_100012118	F022798	AGGA	MSYTTITQVAGMFPTFTRNGAKGPSDTLIQNFIDDVAGEIDAILQRRFQEAFSTQGFTAWQGAFSTDQLNLLEKINRYGACAQLAEVFETSGIAAAARVAKGFEDGFRELCNKLNARDADGKSPAQGGDYDYLFDPLAKVETPRPQLGGVAGGDRYPSETSGENSTNVFKKWDRREF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0326728_10001211

Overview

Ecosystem & Geography

Associated Families

Sequences