Scaffold Ga0326728_10000957

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000957
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 106720
• Total Scaffold Genes: 110
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 61 (55.45%)
• Novel Protein Genes: 25
• Novel Protein Genes with Ribosome Binding Sites (RBS): 14 (56.00%)
• Associated Families: 25

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium SCN 57-15 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035367	Metagenome	172	Y
F037652	Metagenome / Metatranscriptome	167	N
F038201	Metagenome / Metatranscriptome	166	N
F045016	Metagenome	153	N
F045053	Metagenome / Metatranscriptome	153	N
F045301	Metagenome	153	N
F045645	Metagenome	152	N
F046997	Metagenome	150	N
F050262	Metagenome / Metatranscriptome	145	N
F051331	Metagenome	144	N
F051827	Metagenome	143	N
F052500	Metagenome	142	N
F055381	Metagenome	138	N
F057234	Metagenome	136	N
F058854	Metagenome	134	N
F061478	Metagenome	131	N
F063278	Metagenome	129	N
F063304	Metagenome	129	N
F064316	Metagenome	128	N
F078490	Metagenome	116	N
F080330	Metagenome	115	N
F088757	Metagenome	109	N
F091215	Metagenome	107	N
F094220	Metagenome	106	N
F103684	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_100009572	F051331	N/A	MKKLFCLAVLLVAALCHAGTVKLWDGKTRGMDLVAVGHKRVTVFLADGRTTVLGIPILVERPKTAVPVTGNPPATPKP
Ga0326728_1000095722	F045301	AGGAG	VKIIAYNRKINAPLRFLYYLEVFDLFVITVLGFLAPLGMSTFLPVDIPTWHMLLWLVGLTFTLIIIKIGRAPGFIQHRLAQLLRPKSYHPGKRRLPHFLLNPAVYQGEVEAARHPEHPFTPAELQQIQNNSRRLRQARREADLLA
Ga0326728_1000095724	F088757	N/A	MSRKQAVKVVTNNLPRMLALLTGTRARDWKAQDGPDSGCGTDYYYGHRQGNEAYINVDQGHFTISVAGETLFTGDPAEDPRLKRCVSEG
Ga0326728_100009573	F061478	AGG	MQAARIEIHYDGTSMEVFQQIRVGRLRLYNAAVRDRLGVVQEAWKRGALGKTFLVRPIAGQIVGEEVVDSAGRVIAVFGLAITNAFLPDPKPQREYRAKLQTLLNQL
Ga0326728_100009575	F103684	N/A	MKKWVKILLLAPGGLAVALFLLLWFMPAPRTLTRQQLKAEYTRAAQRLYRHEILSLYQPPEEAFTPHGIQLLRRVQELYSPVFLPYLVMGSVPVQPDVLYNPWFDLFILVEDSDGEINSVGLASSLAAGQAPQLQVQEKFWQELYRRYPVAQMATFSRPKAFADTGRVLLEMRNLTNRFGWPSRVQLTSARVTFELYLQRPAQAIYCSPTEPGTYVVFNCYNDRLHTNVMALAPYQVRQVERLIEETAKKGPRPSAPILK
Ga0326728_1000095753	F080330	AGGA	VKKTAPFILLLLAAGTVLAGDPFAGQDASPAGLAEGVRLSTRVVENVYLMPEQITKLIFPKAVEEVSVNTQVINIGRNPPDSKEYYLLLSPKVARGDVDMHVAMEGKTYTFRLIVGREKVNYRKTYTAEGGGSGRSLPKVPPLAPTEINTTRLIHIINQSMRDPNYASVVAKDIGSSPQGAAYLWDGAEVVLQSAWHYYPQDVVILQVEVHNPTSRAIYLSATQIEPFIANTAFHYLLTQQGAKTLLPGQTDIKYIFLQGYGIDLESARFELRLPPAGTQLNAQPQPAP
Ga0326728_1000095754	F037652	GGA	MPYTHFWSEEPEAQRRAWRPTDEVRRRLMRLWVIQALLLAAIVLVAGALTRESKRVPPIFARLPNGVIFETTTGDLQMDRLARTELVNNVLQILYYQEGSFNYLATVRQNVKPQLLGRFRAEMQNASQQTNSTVYLNVVETFEALNAPAKGFDAVTKGVLSKRSNQESASAPIYIRTRWLLAGDRYLLSRVEEIRPGDYYELFLAEKERLKKLSQQELERELGVRKNQEIPLPKRNQLF
Ga0326728_1000095755	F064316	GGAG	MLLRQFEATGNPPLQGEEVLPPKLVGDGNYHWYPLAWLRWLAKWERLKTLVLVIILLGLLAGYGLIRQRRSCQVTLPEPSTEMLLKAKGFDAFNQNQAEAFILFVANAANQASIEGMPNLNLLEGSIDSAIYLRLQQKGMSQQLKNILPADFPIYTLYISEVTRWRYNPATRIVSACVKGFRLSHTLSGKSGMEPYRAQLEIFWEPMSNRNKWGYYVQRLDEFYGAAAQAYDAELKTRDRTGA
Ga0326728_1000095756	F057234	GAG	MEKIEFKLDGPSVISPARGCILLARFQLVGRPELGSIFCDYGLLAGRSLQLFNCRAKTFLMDCPVPCDYALKVDAMTLPGERVVEMFQLQAPPWYYRLEADAVALARQSQDLAEDAGLAGLFSSLIQ
Ga0326728_1000095758	F050262	N/A	MKITFHRRQRTSGATLVEMVAAIIILGLVVTGVAQFLLVSKINVYTDNVKTGVLQALSDTIVKYQPMSVGETNVPVSEDLLPHIPSGTMRLEKSGPANGVYTLQGSVTWRAFPHGDDSFLFHEQLTLEVPE
Ga0326728_100009576	F094220	GAGG	MNTREAIRRLAGIVPEHNLKEVQALPNFNTWGVDSRPGQLPSILYVGEGSREFGAPCWPFMAAHEAMHSIATFYLPADDYRFVLYNICEDWRVNQCLLGIFYEPLNKSFKETRQTILRRWEKEPLKLKSPVSQVLQHLCYLNHLSGKEATLPVSDVYLKEVLGIREQFGSAENWPLVPPDPSRSARDEENARISRRLTKLILDHRVPPDVSPAELRAIMVRTGYNLQFSPGMGLPPRAGGCAYNHSPARNPATQIDE
Ga0326728_1000095760	F055381	N/A	MKFFLRLLFILPALAAAGSSLRDVYLPPWCDREAFQTFELEIKDLPVNCVQLDHPCTLFCTNQVVMVSNGIARARLLIDLKKTPATFPIVVLAPDANGRMTPRQRLICHLSLVPLPIQVEVRGDTFTVTNLTAEPFELEHAEAVNITSQDDRHIAGTLNGSGRLKLKGRAEIRLSRKPGPGGSG
Ga0326728_1000095761	F058854	GGA	MWLCVLCLSISARKSEAEIIDHLNARWQGSAWQANRLELSGLACQGALFPLITQGPGAFSLPSGALVLRLHVLPLNTRDSEPILVLWGRIADPHDKPLARLFLSKGRLVWVCPIDAKGDSLFDAPKDVELATRELTPGLWATVDVLVNPLAYQQTFGWNLEMNHPQDPAKPSGRPPHLARQLTAADWTLQKIEMPRLHAAWLGQMELLPADTRPAQLRPNILRR
Ga0326728_1000095762	F046997	AGGA	VFTTFAYRTLSLIGCSLALGAAASPVTVADVRTERDSIPRALAREKAEALAIFRASRQPLLWQRAMSGISCIENKLQSTPTNAAAESSARLLILGDKKLPLQAEVLKKSYTACQPTNGLPLYVDRNRRRAPETYLDPEILKGGANILTLKGTNQIPACLSGEELEDYLQLRCDQKLQTGDYWRELHARKLDDEQLARLRYYDYLDAHVALRSVPVYQCTEIRSRNH
Ga0326728_1000095764	F035367	GGA	MPAAAKWMFILVLDAVLCGFFGLGIVVLHFLWLQYATGRWPKVRYTDDYQTSFALACAAVVFVLTALRQIKTRLESKSLRPGEIGFLLIFAAIVMVGLTPVPGSNFPQYLYERNYPGKKDTGQEEPKSEEEAKPLKLRRDYP
Ga0326728_1000095766	F063304	N/A	MGYMRLNNSTPDRDVSPHVYNLLDQRLAQQGAPLHQLIRAYAAAVPAQPASPEELLNQLTAVLGKWAADPAQRVKPETALAEEHLRLMDDISKIQGPEGASRLEATLVRVVANQFARNMGSALRIPDESKLICLSDVKPVNAYSAFAQRTALIGIQPHEWVRRWVESQRDIFRNKPTDGGYLRLAQRLSGDWPAQPGQGDAFQRALATFLTGIASSTNHSHAVVVQSSLLDTFARAIRRQAQELGLDRPAVPPPAMSVC
Ga0326728_1000095767	F063278	N/A	MKERYLVIGFQPPTRRISLDSERAESATHAIRAVAGMRKAADVLLAWTPGQMRQMADLLTAMTPQQIACTRRSAQLEERAFRASPTAPPPVRTAGPQHQPFLVISYNPVTEVVHLDTELSDSPDAALRSAAGIRGRAHVILAFTPEQLRGMAVNLEGLTAEQIALNRRAAEQEEKAFYAELAARE
Ga0326728_1000095768	F045645	AGG	MELGLHKCGTEDLNMKLQETTLAALKSVAGVYAVRPIIRGKALALRQGRDGHELAQDEGQAVRVVAVSDVKPSLLSFAAINRIPVKNYTDMVPKPRDPPAPKPAEVPELVM
Ga0326728_1000095769	F038201	N/A	MDVFTRNVQYMVSQVAGEHAARTFQMLQATFPGLRNFDQLRAFARLYVSTGLKPLQFRPLPSEVDPQRLKGELALRFHKGMIVLAPDERIVCRGADAYGPFDPVRAARFSRQLSAESPTNDDNGHTLDPEACAPRAVGMFPLDLS
Ga0326728_1000095771	F051827	N/A	VKSEVYLVQNCGGVSLEVVGGPFDADAAAEIERAIIQRVKADSGLGRGGDDTLHTLEVVPGRKPGFSDFSGGYMENIRWVAAGCPPSGRPDTWDQPDFALTTKEHRE
Ga0326728_1000095772	F078490	AGG	MACRKQRLTHVEVEKCEFNGQQLRFVTGRTRAKAGSRKLARLTFLPLPAGTYEKRIPREITNLLIP
Ga0326728_1000095778	F091215	GAGG	MGRLGPCRRCKTDMRPTADETIRFYREDGAYVLVHDGTLDGGANLRYVIRLIEREMQLKLKSLGYFGQGTHSQERFHSGQPIDEHAFARRTRQLLRLPLAAMAARLMAKGVLGPKPGEPAFENLNEKTGAATLKEWAISYYEANEITCPGSLNVLERNRLFRWRRIPFEYLRHNLQGSYEIPVKVECYRQLLGKGHPLPPLICRCRGWDLLEGYHRLSAHEKVGSETMPCVIIGRS
Ga0326728_1000095779	F045053	N/A	MTTVASYRIPGFGTVDVVQQNDGRNRFWDLFAASGECLNEGHPFWSKPRRKQVEAFLAHDLKEALARIEKECKRLKITQEDLDEVIHEAAQAGNRRLNQVSEEKQQERLITTAEEQAARVNNGGRASQLVYLLEAYGEAGAVQALQDRYETNG
Ga0326728_1000095780	F052500	N/A	MTTQAQRHKASEIASEIIKLHGIKSAVVDDDNGYGSFNLFIELRNRLERHHYLGRRIELEISLHGLMARITRIIERHGARLEWHEPPRRQYSRPGHGKKLFEGYSTDSYKISVHIPQPAEEVQQQRETQLAFA
Ga0326728_1000095781	F045016	GGA	MTLAIAQPPVVTGASLVSAACRKYQEAVGKFKRVEVEWQTLPTQEAVMLVVETQGVLRETRKLLDQGTSQMTGMNSPEWREATGQTTRDEVAECLKDAHDLGNRVDDLLAGCDRLIETCLAHQETCERYQTGKALCIVVAVAIFTIGVALYFLLR