Scaffold Ga0326728_10000953

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000953
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 106944
• Total Scaffold Genes: 100
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 92 (92.00%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (100.00%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001558	Metagenome / Metatranscriptome	671	Y
F001596	Metagenome / Metatranscriptome	666	Y
F001643	Metagenome / Metatranscriptome	659	Y
F003233	Metagenome / Metatranscriptome	499	Y
F004823	Metagenome / Metatranscriptome	422	Y
F006278	Metagenome / Metatranscriptome	377	Y
F006399	Metagenome / Metatranscriptome	374	Y
F006672	Metagenome / Metatranscriptome	367	Y
F010114	Metagenome / Metatranscriptome	308	Y
F014420	Metagenome / Metatranscriptome	263	Y
F048483	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000095314	F006672	AGGAG	MTAADMLPGESNGHIISSIINLVCPQCGGRMSEFQCEGRCGRNWLAEWEWVNLATRSSKSRLRGHAAHRMR
Ga0326728_1000095318	F003233	AGGAG	MKTRQILITILTLATVWHTAAARPKKKNIQADAPPLESILAGTSMQSNPVLSDLIAPKPEMPPGPLDVLNAYEIAMSMVADKTSADFSAIVQAQQANQITREQAEYLLQQIYQMAMMQYQVLSALHEVLKHDIDEASQQGTYSLKTSSSNTVLVVPFPGSVSAYR
Ga0326728_1000095327	F001558	GAGG	MLRVQTQELDGTLICRLEGRFTGKGAEEVRTLVTRCDSKLELVVDLTEVMFIDAIGEEVLLFVKRLGAQFVAETSYSRDICERLHLPFIGKRKSNMQVPRNSDAGASSSPAMIKHT
Ga0326728_1000095346	F014420	GGAGG	MSESAEDLRNWRGLYKAALFETDTSKLPWRIEEARKALIFRARELFRTAPNYDGETEAMENALYALQALENCLRSNTKDRRHVPRAG
Ga0326728_1000095354	F010114	GAGG	MIIELNDDETRLLYNVLLEQAQEHFSYASTSEVAERLYKLATRFWRSARERPNITIA
Ga0326728_1000095355	F001596	AGGAGG	MSWFHLSTAAVDTRNYASPAEIVACFQDQRNVLGRLAFLITGDQATADRAVVQACEMTLQGNSPFRDWLFEWAKTATIASAISHGTEAIRICEAAYKDRRCPHVEHLSQGDAEERAASLEIILGADSQKLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLAANCHALTWLHERHVKLVEVNRDASHAV
Ga0326728_1000095356	F006278	GAGG	MFRAEIQWLASGPTLKLEGKLVADWAEQARCLVTKDVLPKGLIVDLTEVSYIDSAGEQLLKWLAGVGALFVAGSVYAFAVCDRLRLSPMQRIAERRKRRHGNNEERSSIRHSHPVEAI
Ga0326728_1000095357	F006399	GGA	MATPSLNSSVQSLVTEYGVFWQFWPQFEQTHGERRLVGFEVELIGSHTSDLSHVDPACPTCRHVRSVLLAIADLMPGELTLSRNSLTYNIDSHSNSIVCLPALGNRSAVRVSIDVFLNRANGQSLETDLLNEVKTFLNRWDIHQR
Ga0326728_1000095360	F004823	AGGAG	MYATKAINGVPAIQRDGQTVLNVCGQNRDFANWLCALLNELGRTSELLLNEHEREWLNGNDRAFGRTVQHA
Ga0326728_1000095370	F048483	AGGAGG	MCSPLLTLQAAPTSASLVQGACCDICPPVYESCKARFRSLRMNWVVVTDTNGNRRLKMHWRAIQ
Ga0326728_1000095372	F001643	GGAG	MNIPTDTLIDMLYIILTGDFAITANDVAEIEQIQCELQRRGGEQRWSFQAVN