Scaffold Ga0326728_10000856

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000856
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 114429
• Total Scaffold Genes: 86
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (62.79%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000525	Metagenome / Metatranscriptome	1049	Y
F002611	Metagenome / Metatranscriptome	543	Y
F012841	Metagenome / Metatranscriptome	277	Y
F032300	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000085621	F002611	N/A	VKAYRIERIKGGMKFTCTQCDHSVSTLEFDPKGGNLRTQAATAINDHATKAHHVSLVVSPSDSQQRSWR
Ga0326728_1000085623	F012841	GGA	MKRSTPKEKLEAKTNPRMFLIPCSCGASFAVAEDYDRRGMHLRSFIPCPNCGKRHDPRNRLLSLDYQDERFWKVGGC
Ga0326728_1000085652	F000525	N/A	MRTSKSLLLAGWLCPILLFFLITLGCSPRDLLTRRLAADLISASDTFKAPQVFWLRTGIVSNKDFSSPDSMVLQRRGWILGTEAKCPADVEPPPCWDVLLTPLGVDTIRPLISNALPGNGLDNGPMAIQVARRELLGISGIGKAGNFADVEFIWRWVSINQVGAALYDSGVRYRSTVGFRGYDDGWRVVEQAVPSNQPLDEALRNAQPTAQ
Ga0326728_1000085668	F032300	N/A	MRALLLHPGDDFHGPWTCEHWDSVVDLGRAPKSFYDERCADLGCPVFSIFDLALEVDDLRIWRGLLALGMGRVVDRFGIDWWDVIGLMLQPELQDVQLALRLVEKLRGCRVLAASRPSLTAEAVRLQLGIPLQALPRGLRKRLADGILRRSVTAAANLSFNQFLQVVYDKYDPHYRWRRKLAGPAAQPANGKSEAPSEPLVLLPSAYSNVTKTALRYAGILPNQKFLLVLARESGAVSPVPANVARARLASFATSRYDRNELRELEVCWQRMEQALAEHPAFRLAARIGILKKGPRWLRWGVAVRDAWVRVFETRAVAACLSADDSNPYTRIPLLLAEQRGIPALACHHGALDCRMAFKNPRFSNYLAKGEMERDYLERICGVDGARICIGAAPAAAPGQENASLWSADAPWLVFFTEPYEADFWRVEAIYREVLPRLCAAARASGKSVVLKLHPFESARQRRRLVQRILSEQDRKLVSVTDAPLSGEILRKTWCAVTVESTVAFECAAHGIPAFLCGWLRHAYSGYAPQYVRFGVGCMLENADDLLRIPEVLHASIPGPDTARRLIQAISPEALAEVLRPPVEARSVSHTKEGL