NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000746

Scaffold Ga0326728_10000746


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000746 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)123451
Total Scaffold Genes95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)77 (81.05%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019074Metagenome / Metatranscriptome231Y
F025947Metagenome / Metatranscriptome199Y
F032518Metagenome / Metatranscriptome179Y
F042129Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1000074621F042129AGGAGGMFAHIWRMRARKKRTKDYETFGRQVTLSALQKIDGCQQAYFIKVFEARKPDYLWVVFWRDHKALEAARTNPVWRDQIRKFEAGKFYKTIPLELVCECLYSFGGTAARAPKKRVKR
Ga0326728_1000074625F019074GAGGLSAKASFIVVLLCVVLAAGSLLFSSQNQGAAKPAASAAKSSALPEVWKSVSTGKEYRVKVEGDRFTAEWVNIPPEAAKQGAYTRTECRRSGTRWIGTTRFLLPFPCPPPNGKLKMCPLILRFEVDFISPDRITGGGESLRGFDCSTCEVKETAWRPFSWTPKRQ
Ga0326728_1000074647F032518N/AMRIFGKSVSEYVRFESGFLILVLVIGVARLAASLLGVPNSQVKFLSLTVCFLLGMLYYAVRVHTSGFGSYKQLLPIYALAVVIGNAIIITGILIAMQTGKDNIFSAPEFSPGKTSGRTWGHIGGHAVAIVVLPLILWALGSLIMLVTKKLTPRRQ
Ga0326728_1000074673F025947N/AMPRTKAPTIPDTHVLKRLMEEYLEMLRPTEKTVKRVLALNPRREQYWDQISEHAADISMVGIRSTTIVEEIDSLIDQLPED
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