Scaffold Ga0326728_10000671

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000671
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 130432
• Total Scaffold Genes: 115
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 78 (67.83%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000250	Metagenome / Metatranscriptome	1458	Y
F001273	Metagenome / Metatranscriptome	733	Y
F002746	Metagenome / Metatranscriptome	533	Y
F014816	Metagenome / Metatranscriptome	259	Y
F046736	Metagenome	151	Y
F105036	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000067116	F105036	N/A	MTNILDQVARSSAAARYNQFQPSDQREYFALRLAQKLDDAVAVRHYVELAEHYSEAQLLSAYRRAKATGSHLDPARSFHLELKRLEGRPCDGPAIRRLAAIRIERRAVAVAILEGEHLAAPPQVRQLSSNSDKALGSAASFVSRILEKYPLGTVALETIPCETEVLRGDLMEIISRVLVEENVGIWEVPKLDVLASFAHPHPRFRNQVRQVISAIWPGINGSFGAPLVKDALALGLYCQIEHLFNL
Ga0326728_1000067117	F046736	AGG	MSFTLVHVAHLLGHQDASALSDYERGKHTPSLANALRLGIILRVPVEFLFPALYDGLRNEIRAEEERLAAPQQATLF
Ga0326728_100006714	F002746	GGAG	VRVRDLGTRTAPASIRELFSRVVRGHAPAIPVQRRQIPYWQERGWTQTGSRYTGPYQTPYAAFQGWIEQHRSGQIDFFLYLPSDEIRRHSHWTCFQHRGNDWYLIHMGKEPKDVGSGIMTIERLITEAYEQ
Ga0326728_1000067145	F000250	GGAGG	MSKTEAGLFKYPGLAKQVALIALLLTFSAFARDHSALNGIWTLVPARSDFAGQSVVQTGTVTISDRQGIIIVSRSFVYEGAGETFFYKDITDAENDATIHTGKDLTSKTRWDHDVLRVTTTQSGAVTLESYTLSADGTMMVSVVRPGRKPVTLVFHRE
Ga0326728_1000067149	F014816	AGAAGG	MEAIFLTDDELKRLEARFGPVVRQMGPWNSDGTFGYASVPVVAVEKATEALANRDLLTALARLRTPEGTTTFIELLGDFGPALVERIVDAYREFSLWPGPPVSMYTRNTS
Ga0326728_1000067152	F001273	GGAGG	MRIDLYTKTILTLIALLLAVFTLKPILQPQGAMAQGSYAGIQFSYSGGNHAFFNANTGDVWEYGDHGNFRNHYKVRELGKDHGR
Ga0326728_1000067156	F014816	GGA	MEAIILTDDELKRLETRFGPVVRQMGPWNSDGIFGYASIPLAAVEKAAETLANPDLLTALPRLRTPEPTKTFIELLGDFGPALVERIVDAYREFSLWPGPPVSMYTRNTS