NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000624

Scaffold Ga0326728_10000624


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000624 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)136098
Total Scaffold Genes124 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)72 (58.06%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001878Metagenome / Metatranscriptome623Y
F005307Metagenome / Metatranscriptome405Y
F011616Metagenome / Metatranscriptome289Y
F041554Metagenome / Metatranscriptome159N

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1000062451F041554N/AMLVTFACAALAAFSNFAHAQKMDIGFGAATTLAPDASFVSGVESAPSLKGGTFLGFNGDVLFWHNLGFGAEVFWRAGSTNCPASLCGTDSGVTYRPVLYNFNAVYSPKLASHAYLELVGGIGALDTHYSACTGVGVSCGGSQLISSSNHFDVDLGGGIKLYPSHSGFFIRPEARFYWVNNGTADYSSNHASRVGATIGYTFR
Ga0326728_1000062488F001878AGGAGMSAPSRRPEIRRRRTRAEKIAKLRKRLAAASASNDKDRLTAKLHRAGLVSPGNPLLKNA
Ga0326728_1000062492F005307GAGGMDRAVAVRAALKAGVLGVFIGMIPFLGIVLTGALAVFFYRRESRFVLPAALASRLGGAAGVVIFAINALLVLIRILVFHAQQEYTDYILKIAQRFGANVADPDIQASIHNLFTPSGLAITFFFGMILTVALASVGGALASLLLRLRDTGV
Ga0326728_1000062496F011616AGGVNAPVPPKPVADNEHRDNKHQHRHSIYAAEATGLLLMAVLLLILTIIRYWRYIPWSAR
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