Scaffold Ga0326728_10000542

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000542
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 148469
• Total Scaffold Genes: 113
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (51.33%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056466	Metagenome	137	N
F075595	Metagenome	118	N
F076001	Metagenome	118	N
F082059	Metagenome	113	N
F099028	Metagenome	103	N
F102386	Metagenome	101	N
F102942	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_100005423	F099028	GGCGG	MNAFDTFTVSEVSLRLGPTAIHRRPGVVSRVTPVLLAQPYRGFAAGTPLGRVQTRTHGKLPQTAATFSESSGAVLGHDYPWLVRMFREGPCGDRQARLNRIWPGRQYRVSRMFGFLAHDPCVYEEGDELTVQQGGDSITTLVSKKGGKRYSVSWPRAAFESCVDTFALREIS
Ga0326728_1000054247	F076001	N/A	MMINHLGRKSEACGLIRKQKHNTKMKKRYKTAIAGRVNPDIRSKVQPLIEQFAQANQLPFNTVFGAVMFAAERLKGRVTCARVEALVTAATVQTYELEMQRRIAARKVQITGIIRHALPVAKRTTEVIEQLYRQFCGFQGSIPALEQQVQAATAAV
Ga0326728_1000054275	F075595	AGG	MAEKLPQSLRQRLVPLFKEILAYHWVEELTFNRLSGAVYQVLLSEENSRLTEDQAVDLAVNLTRRERLPELLARYDAAVQKREQQAQKQVLGLLNNMIPEDTPHRERVVQGTLDMLQKFPLVRSITGIRTLVQARIDHQHQDVDEDEYLALT
Ga0326728_1000054278	F056466	GGA	VKRYYLILSRLSLAVIILQALIFLHSGLNVEKFNRRIDRLVLDLSQKPPPDPVLQPLYREAGARLAQLQQHNREHRWLLKAILLGGLLHVGVCYSLYIHFLRMGFTWTKIFLHANNLFTSLLLPSPAGLAWTLAYIIGTRVYKHCCVAFTFSKPCT
Ga0326728_1000054280	F082059	AGG	MVVQMPLVDLGCLCLLPDFRQLMARFPRHIKVNMVFPPYRLALNRQVVPFVLAASKGAPILEKLRRSLQASLGQHPARPLK
Ga0326728_1000054284	F102942	N/A	MKTGMLFNVALSGQLLLGAIPSFGQSNGPTAGVLKPDTTVSAVSNIGNPQNQESSKRAGPDRDYLTEIRNQAAQCIADTVVATNSVPAEIGNLEWTGQYAERFLRVPEGNSGKPKLVRFLIPVYREKSTRPEASVGTEDKQEQDRRVTGIGSTE
Ga0326728_1000054291	F102386	N/A	MIHMKTILILTALMLTAAGWSQSAGPASKAPLLPVPLAAPNTNAPAETFKPLARLNELPSPSAVPAAGEPFKTLPRLDGQPTAGRGSPEQMARQGAQVKKMLNLYKTPAGRAQIAELMTVIRLANQQPEVRAKVDEARKLVHNYIRRVAPELLPTLETMNANRETVRQSKQATDMVY