NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000511

Scaffold Ga0326728_10000511


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000511 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)151677
Total Scaffold Genes135 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)99 (73.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002306Metagenome / Metatranscriptome573Y
F027752Metagenome / Metatranscriptome193Y
F032158Metagenome / Metatranscriptome180Y
F075092Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000511116F075092GGAMNRPKVIIAAAAAFAIGVAFAAQPTSVLADRRSGEVQQREPWVPGTNMVMSAHEANVAPLAPPR
Ga0326728_10000511129F027752GAGLLLTPVLANAGVVYQVAIRPVDDNNMALAAPAAAPVVTEYFVEDGKVRVGAKNVKMAYLFKDRTMYVIDNPSRTVHVLKHATLNQVIAHYADAVQQLEAAAANASPDERAAAEQKAADMKAVSDRLRQPVPREYRVTVRFESVDGRACRVWEERESGTKRLELCVAPTATVPGGADILSGMKTLSQFRQGSDFAFGVEFGLSDWWADFASLGGLPLLVREYKYDSVVSEIMLTAMRQGVPSASQLDIPDGYQVQEGPDYVQWYMR
Ga0326728_1000051189F032158GAGGMQDDNELKRAFINRRDWGSYLSALQSAATYPKVLEAVKSSRDWVAQGATQASSWLVGSTELRDKFSPG
Ga0326728_1000051194F002306N/AMNIQSEIEFFSDLSLVDKARFIVRLISEVCEEAKVGAGDGQDMSRLKFATEMNQRLARFGYQLLSEDSARPPDDVLIRMLLATRAEKNSERIIQNAYRRVLTSFESFDTTVLLNAR
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