Scaffold Ga0326728_10000475

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000475
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 156743
• Total Scaffold Genes: 140
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 110 (78.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002606	Metagenome / Metatranscriptome	543	Y
F030835	Metagenome	184	Y
F032905	Metagenome / Metatranscriptome	178	Y
F049363	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_10000475107	F002606	GGAG	MGRAKGVVIHGVRFRPGEVDWEDAHSTTRGKLPDFEAMRQGNTFVGSKITSTGLIAKIGKYLLVITEKDEGLEEFDYTLIPLHAKIQIHYH
Ga0326728_10000475137	F030835	N/A	MEKKGGLELRLKFPKLMKTNVEKMSVFRLSMMLMKTNDLHHSLHYVDENK
Ga0326728_1000047550	F032905	AGGTGG	MFKTAIRVVTLTLCAIIGLWAVGHGIALATTVSAPSHEDMLQYLLEVGVSIAGGVCVLSVAVQQLICWRTHRKDGGLI
Ga0326728_1000047588	F049363	AGG	MAETTNVAKKTRLPDTPSQMVRQRWLSLLDLSYSTRRVTQQEIEPGVHAVVVPAACRRASTQDLVEVEMRVASSQVPGMARGVRLSLGRLGDFALTLPEAYHGWMGAWGRDILTGETLVTAFVDLAYLEAALLARLWDHGVLVEFGSPLAFFRRGALTDYANIYETVVAMLAEGRSLADTAEQLAPEIRRRLQLYANAYLQLSSIYSQAAWHIDSDNFVIKIPGSRLSLSLQYWELRGDHTLEQKVLHGWRSRIEKLLLQAATGGEDKFPRSFAA