Scaffold Ga0326728_10000413

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000413
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 167377
• Total Scaffold Genes: 167
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 139 (83.23%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002289	Metagenome / Metatranscriptome	574	Y
F003228	Metagenome / Metatranscriptome	499	Y
F004753	Metagenome / Metatranscriptome	425	Y
F010341	Metagenome / Metatranscriptome	305	Y
F010884	Metagenome / Metatranscriptome	298	Y
F035732	Metagenome	171	Y
F063197	Metagenome / Metatranscriptome	130	Y
F091898	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000041317	F003228	AGGAG	MEDTQANQEGSLDPIQIQAKAAILAECEKLAAAGVRFVAVHFDGSGDSGATEEVQCYAPDEYIYDDSQPIQRDVSHLQEHFEALVPLGYENDCGGFGDVVLDVEARRISVERNDRFEDYSTTTYEV
Ga0326728_1000041323	F035732	AGGAG	MHARLKSYALVICLFVFLFVSIGNGLHLTPGAAFIGALSGTPLVILAFNRWCDARCRREETRREEPASEIIPLRERP
Ga0326728_1000041326	F002289	GAGG	MFGRMMIEPLVQVDPGADLQSAMAALVKVTETVEIVRWIEFPASVLLFLLVPGDPGSGAVYVLDRKKGTWYAVDFEDEQFGGYSVSQLETLLKECNFLDLIERPGLWRAGLQWVVLPGMVPEAAV
Ga0326728_1000041336	F004753	AGG	MDEQTNANEVKPPAPNEIGSDARELIRDWEVLFWAFLLFGLARLAWLYLYRPENKDFHLGLSCGFVFCGALGFLMRWVFSPKRTQ
Ga0326728_1000041337	F010341	GGA	MDHRLRLQHFSCDKRQSENMTDPLTVKPVYKTLSQYISNRSDIGAGKAMRDGVLEPSNPFERKAARPPRRWFVLFSLVSALFFGCFNYFNNLL
Ga0326728_1000041340	F010884	AGGAGG	MVKQRFRVLFRRWFFTVAKFCGPILLFELFVMVRQHFQYVPPSISDLLMGALLAFLLTAVLCWLWALGEWLWSGLRRLRGLLSELRQCSRSYSNPEAVRTNKA
Ga0326728_1000041341	F063197	AGGAG	MTSTAATDTVPAARTTRTDSGAENTVAKKGRSRTSSDEENNGNARYFLATANGDGGSPAFDREVANEGEALVEALRLGVTFYEVQEFRVVPDFAGRKPQLNKEAVKGR
Ga0326728_1000041352	F091898	AGG	MGFMFMGRVNGINHYKHGITRTYLYLDDAGNCYLKEEKGGFVPGNWGIELGKMEACLARLDSSLASPYDEEFIVRKRNALRQLGISLLTIEVQAHDINIH