Scaffold Ga0326728_10000380

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000380
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 174722
• Total Scaffold Genes: 147
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 122 (82.99%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000313	Metagenome / Metatranscriptome	1323	Y
F000438	Metagenome / Metatranscriptome	1143	Y
F059292	Metagenome / Metatranscriptome	134	Y
F061244	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_10000380123	F061244	GGGGG	VNAKDSFRKWIWWFLGGIVALQFYFVRELLAAFALFALGFVVIGLCLAALYLVQKGWEAGVGRVAASQNAWILAARRGVATVEEWGRRPIRRPDSEPAH
Ga0326728_1000038047	F000313	N/A	MAKISERWLLFKYVGGEFTPLSKPLKKKEHAEKARLKYPEKERKTIGIGVIQTKG
Ga0326728_1000038081	F000438	GAG	MDKFEEFGRKLDDEISRLRKYLDEEVAPTTERRTAQFLREVSDKLAEAAKKLEERVAARTPQEPRP
Ga0326728_1000038097	F059292	AGGA	LAVLCAVAGACRAQQAPAASGARILLLPRKIVAGERSTLAVLDVHGRLTPGVTVVFSNGDKVTTDTTGRALFVAPLNPGVIFASLEGRAGRVTSVILSLVEVPSGSQEVILAPRAATVSDRFEIAGHGFCGDADANKVSIGGVPGLVLASSPAYLAVLPPTDMDPGPARVEVSCGTRKAAAFTVVFVSLELDASGAALAPGEHRELTVRVRGSTAKINLEARNLAPDVADLQGGTTVRAASSGGADNVARFALLGKQHGSFLISIRLVAPLVAPRP