NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000345

Scaffold Ga0326728_10000345


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000345 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)188517
Total Scaffold Genes202 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)141 (69.80%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013739Metagenome268Y
F036521Metagenome / Metatranscriptome169Y
F078041Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000345126F078041N/AMPVEDIVKNHELLAKVMSHYRHQLEHLHEDEASISNAMKENLLFRDTIKQIEQILSLKGAKATEEAKKYVKLLTIAISQYAKDLESLFEKTKKLLPDTAEGDLRRLEAELKSLKTYLTD
Ga0326728_10000345130F013739GGAGGMARESMLTQKSIMTDDTLSLLTGQPKGALLSYTELTKSMHQYIRSKGLRLKACPNCKSQIPGYATFCDKCGKDVAPTPVVAK
Ga0326728_1000034532F036521N/AMFAVSDTNLFTGLCEIDMTIDMRPLRKFERALAVTILTLTLTLIVGGVFANVYAYQSPPYPFPPTFPVNSFDFTLTASSTLVKIQQGQTGGLIVWANLYCPNSTTNIRCDSTVLQTIYLSVSGCPGGAFCVLSRQVVQVPPVTESASNLIVYTFFGMSASSSPTLVTITGVDQFGHTHSVSFGVIVCYC
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