Scaffold Ga0326728_10000322

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000322
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 193531
• Total Scaffold Genes: 188
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 153 (81.38%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017431	Metagenome	240	Y
F019267	Metagenome / Metatranscriptome	230	Y
F021036	Metagenome / Metatranscriptome	220	Y
F022798	Metagenome	212	Y
F023263	Metagenome	210	Y
F040975	Metagenome	160	Y
F041547	Metagenome	159	Y
F041548	Metagenome	159	Y
F048047	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_1000032240	F021036	N/A	VPEPPLLQLAQDLEWLGCELEHYGHQHALQGFPESGPSWDTFCEKRRGVLVTADKIEHELKNAVRYNPARLVGVEYPLDETLDSIAALLETMEEIKHCSVYAVQVIPSKVRAFTKMIEEYLQAMGKVPG
Ga0326728_1000032265	F041548	AGGAG	MDAQSIQVQALITFVMPLLIQLAKRSRSAAFAWIDQNKPKICLLTSGVTALLTSMGIEFVHSPQSLTVSWPDGATLVRGFATFLVAAVLQFAAQHALYDGFWRHVVPSAGARSPKSASGDPVIG
Ga0326728_1000032266	F041547	GAG	MISASQIEALLLGSGGFLGTCMAGVGAFRLFSAATHGVLRVPISLEKGAESLQRVMIAIEAQNAVTDRVMEMKALLMATREEILKMASEREEFGRELRLMSRKIEAFACFAQEG
Ga0326728_1000032267	F017431	AGAAGG	MAREKGKSEQEFDRTEILRYLNECGLQPVTPRTILIYLDDCLRPVSLPGVEFHLRYMRDRGWVELGLEKRVGTPEAICWTRITANGVDEYDRRCVALGEAR
Ga0326728_1000032277	F023263	AGGAGG	MLGNEGLTAAKFDTNIRALRGTVMSLPVTNPSTESDFYVGLPSGFNVVPTGVLAQDVVEPGYPLTSELWLDPTTNNPINGSTPPAPFISQGRAWGLVINAPEAEVIAADTTIQAEDDVVIADVYGRVTSIRNVTTGNTAYVVGKAKYPPTAVNQKIRIQVSLRQTKV
Ga0326728_1000032280	F019267	GGAGG	MSASATCTTLYTFRLDRRQLVRRIRVDITGLASGANTIPHGIVAPNNQSVGQTPKDELVLLTSTVAVHRTQAADATNLYYTVDSGSGTTISVYVTV
Ga0326728_1000032281	F022798	AGGA	MSYTTITQVAGMFPTFTRNGPRGPSDTLIQNYIDDVAGEMDAILQRRFQEAYSSLGFTAWQGTFSTDQLNLLEKINRYGACAQLAEVFETSGIAAAARMAKSFEDEFHELCNKLNARGTDGKPLAQGGDYDYLFDPLAKVETPRAQLGGVAGGDQYPSGTSSEDSTNVFKKWDRREF
Ga0326728_1000032284	F048047	GGAG	MSGSGIAKANDFRAAVERSNVEQVTLPASGLAVLLCRPPVFAALAMGRTGTQLQARVTDAKPEEIKTEDIEAFTEWLTGALTRLFVQPRFAGAPEAGEIGLADILIEDLKFIFQWLRGEVFVPRGSGLGVRDSELTANPETRIPNPESVEDLGRFPGGQRAASVFGGSGEAQPLPSERTARAHRDAGLSAGLYRG
Ga0326728_1000032289	F040975	N/A	MVRMIQGNQTWQAGLNAQAKQPLYVLHIPQFGIVLASFTQSQIQSMTQSGYGVMTWGIGGYGT