NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000250

Scaffold Ga0326728_10000250


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000250 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)217621
Total Scaffold Genes187 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)133 (71.12%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000548Metagenome / Metatranscriptome1036Y
F000858Metagenome / Metatranscriptome858Y
F009829Metagenome / Metatranscriptome312Y
F052109Metagenome / Metatranscriptome143Y
F094233Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000250180F094233GAGMKHTLLFIALLCMLPVSLAAENRSMQEGTIVRMRMADCDGLRHSFMASMSGGQMPAESCAEYVLVTDKVVYVIVGKSSDQLVPLAETTRFHFQNSEVVIRVDDARRESHFHVKAMVLRPEWERSQQLQEAEAVALMAAHRLQGAALTGTQR
Ga0326728_10000250187F009829AGGAGMFTRILEFVPKMEKKEELIRVLKNEVLPILKKQQGFLEILPFFPEVRNEKALTVTLWAEKKDIERYEKDWFPKVEEMIKPYLTTPIVVHNFYRVETTLCEHFEKALAA
Ga0326728_1000025029F052109GGAMDRRKEPRLRVEFPVRIWGVDRMALPFAEVVRVKNVSLSGAMLLGVRAKIRAGDLLDVQHGSQRAQFLVAWAESGEVGIEALPYEPCIWQIALPKSDMVGTG
Ga0326728_1000025041F000858GAGGMTTNPYLFAAYAVTWIIHIVYLATIASRYSRLKREIDELKK
Ga0326728_1000025054F000548GGAMPKAESPRPRWIGVPVRAFLVTFLLTLLAFAVALLLSILGTIVYSQVEHVAPNLQYAYRHIAFPFAITVGAIVLVVMLTVEIRNYRQRKALAAIERAS
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