Basic Information | |
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Taxon OID | 3300033402 Open in IMG/M |
Scaffold ID | Ga0326728_10000237 Open in IMG/M |
Source Dataset Name | Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 221924 |
Total Scaffold Genes | 188 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 149 (79.26%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: New York | |||||||
Coordinates | Lat. (o) | 42.5488 | Long. (o) | -76.2662 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000696 | Metagenome / Metatranscriptome | 931 | Y |
F007663 | Metagenome / Metatranscriptome | 347 | Y |
F011251 | Metagenome / Metatranscriptome | 293 | Y |
F014050 | Metagenome / Metatranscriptome | 266 | Y |
F014439 | Metagenome / Metatranscriptome | 263 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0326728_10000237147 | F007663 | GGA | MASHPNYRKMQISVDTVSWTPVVAPMDCVGVAIKNSQLVNLSMRTDSGDATTQDTIPAGSQEGITAPRHGSNPQDAGTGARFLAGDTIAYLQAASGTGPVIVTFVR |
Ga0326728_10000237152 | F014050 | AGGAG | MAIYGVEVWLKGLAAAAIAGAANGVITGFAAVGIDPEHFNLQAGLRATLAIAGVSAFMSGIIGVAAYLKQSPLPAE |
Ga0326728_10000237159 | F014439 | AGGAG | MAVTLNVTDVDLGVGLIYVFGTAALSGTYPSGGDTVDWTSIRTQLGYDGQSVASSMANPAFGPVQAAFTVQGGTPNIYNLQQGSAPNAWKLRAYTSGSSGAEFTGGSAYPSSATGDTITFSAVFRKLT |
Ga0326728_10000237166 | F000696 | GGAGG | MPVLGTSAYNTAGQITSLVRSLLNDAAGNLFTDTVLIPYANAAYRKVQRALANIGSSGFLTDDVLLVVPAVAGVDSSLQVSITDSTAAPNQLPSDLVVPVKLWERTNGSTDDFVEMVDLTDHGGLPSQEQGLTLEFWEWRADGLWFLGATQDTQIRLRYQKAFPDLTDGTSPVLIRNAQEVIAYYAAALASASRGSPLAERWDDAGDDALEDLVARAVQREQNTIRRRRPYSSRSGYGPI |
Ga0326728_10000237174 | F011251 | GAGG | MNPYWFVIATTIIAQLGFFLRWLHRRTRDDEINRAFVRDMAVNHLPHIYHALRQVAARLSVELTEPPPIRFVDLNVKDRHDC |
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