NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0326728_10000182

Scaffold Ga0326728_10000182


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000182 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)258096
Total Scaffold Genes251 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)189 (75.30%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000136Metagenome / Metatranscriptome1961Y
F001348Metagenome / Metatranscriptome717Y
F002692Metagenome / Metatranscriptome536Y
F005753Metagenome / Metatranscriptome391Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000182122F005753N/AMHARKAAAVTRLDAGSVINGVYRNPSFGFACKIPAGWVLRTEEMNVGQDGNEAPAKEGRAALDRTAEGGCPHTGGCGRVFLAAFSRPPEARGEDVNSSILIAAESAEAYPGLKEAAQYFGPIAEVAKEQGFEVINQPYEFLAGTKTVVRSDFQRDVGTRMMWQSTLVILERGYVVSLTFLGGNEDEVEELVQGLSFGAAGKAVK
Ga0326728_10000182132F000136AGGAMAKAAKIKILYGEGDAEEQVAPAAAFEKAGHTVEKAVGRKAVVEALNKGRFDLVVLGPSLTRNDRHHLPYMVKKVQPEAAVLVMHADGSRHPYVDACTDTGASMENVLARIEGMQIAGMMAAGAAAGR
Ga0326728_10000182137F001348GGAGVNETEKILASVAAQLMNGEEVVVEDQKIKVRRVGSGRLRMVQFRMNGRVIDAIEQNRDKPSRWGKLAREKHQVVQFRDVETNRYLAVSVDGEVREYGK
Ga0326728_100001825F002692GAGMALIAYLVLGALAFATLSDFRIRSLTLLVLGLFAFKSWVRRKDVLHPDGDSERE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.