Scaffold Ga0326728_10000147

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000147
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 289649
• Total Scaffold Genes: 265
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 214 (80.75%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001364	Metagenome / Metatranscriptome	713	Y
F008739	Metagenome / Metatranscriptome	328	Y
F019938	Metagenome / Metatranscriptome	226	Y
F038046	Metagenome	166	Y
F050843	Metagenome / Metatranscriptome	144	Y
F064326	Metagenome / Metatranscriptome	128	Y
F076771	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_10000147102	F064326	AGGAG	LEQVRFIFWELLKILGLAFTSLLAVKAVSSLKATGVKTVASRLARAKPWLYAVILALAGLGAWSLGYDIAAEVYYWASLSDAQNSRPSKAYLNALQAVVLRPRIPRYWQALESAKFGLGQWASVVDDRPAMQRLSGRDLDEVDSYRVAVCLFFLGRYDEALSITNGLINQNRFYLLPFILQGHILTAQRKYGEAEQAFLYVLKVLPTDQAAVEGLAHAYFLEGNRQQALKILDDTSKFTFSIEAQRRFEALKGLYGE
Ga0326728_10000147143	F001364	AGGAGG	MFGALLFIACVVLQFHYHDSIPWYIWTVAVIGLCVSWGEPAMKLKKE
Ga0326728_10000147146	F008739	AGGAG	MKMRKMVPIVLTLTLAFAATFAQGQTKKPKPGPLTGTWECTAHGGSQGDMPFTLYLEQTKDTLTGSVSSPMGGTEISAGTIKKNDIEIHIDTPQGNYQLTGKLKKGELSGKWSSDTENGTWEGKKQAAGGK
Ga0326728_10000147238	F076771	AGGAG	MYSVDQSSLVSAYGQFFGAWPWDHYATFTFGRKLSESTCLHHWDDFIDSLGRLTHGRVAWLRADEQRWSGLASPEIPLHYHALLKYQNVPAPDEVAGLWRSRAGDAKVEAYDAGGGAAYYIAKMFPYEDTRYDLGGLEHFARPPESRREWVQ
Ga0326728_1000014727	F050843	GAGG	MINLRFAIGLAAILVSSAIFFAAEDTITLLAGRELHVQFITELSSKANESGDMWTGKVVEPVFGKGGEIVPDGSTVDGHITFVNAPGQAKPKSKEKEKGDFLLIADSISMPDGTKYNIVANPPAAGGSQPRGQGTGGITAMASNFSTKKGKNVVIEPGTEVTFAISHDITCTKVPVRQ
Ga0326728_1000014733	F038046	GAG	MTDQSTESFLPPSKRAARRLLQRAFVLTGRDRPLRQHIREARFTILWVLEDWDLVWTIIIDRGKIEFARRPAKHPDLTLSWRTATEFFSSASLSFLPKDPLKLAENPELRRAASHLLNCFFGHLGHVLRNPVDGAGESLL
Ga0326728_1000014787	F019938	AGGAGG	VTVHLPPRIERIVKDAVRSGQYHSAEEVLSEAVSVWQARQTAAEPTGDERQAAIERLKNFGKTHQLSLGGMTIKQLRDEARP