Scaffold Ga0326728_10000114

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000114
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 324618
• Total Scaffold Genes: 275
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 193 (70.18%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000634	Metagenome / Metatranscriptome	971	Y
F000873	Metagenome / Metatranscriptome	851	Y
F001355	Metagenome / Metatranscriptome	716	Y
F009823	Metagenome / Metatranscriptome	312	Y
F063426	Metagenome / Metatranscriptome	129	Y
F093330	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_10000114155	F093330	AGGAG	MRVAFHQPGVTGDVDVAEEKGATPLHRLDGEGWITGAQAQATKGLGMVAVGFGSDEFTVRGATPKVGAAGMEEGAGEGAEREDELAGIAALKSGPGKIEEKLLEGLLRLRRVSRPRISGMGCQWAPIA
Ga0326728_10000114172	F001355	GGA	MAYPITKRSPCAVCGLDTFRHTGWFLVVENRWLDRLKILSWHPSLASQKDMKSVCCRQHLKALIVHWLTEASLRLPPAHDPPLPIGSDATLTDADLDPNSVGRLVGELAVYRESFSRVWSGSPAALECILDALITIGAENKPHALECQLFDLPTESSRGLSLQ
Ga0326728_10000114257	F063426	AGG	MAQEISVSYHAVKSKVYRLIDALVADEKSEADVQESIRRWWALIHPADRPIAQKYLLTVLGRSVSALGAIEDGLTSSNGREVTYGPLPSERMKVVERIVKEAGVSSAV
Ga0326728_1000011429	F000634	AGGAGG	VPATAHQPDHPSASPSTIKILYGESDEHTLSAQAAEMKKAGHRVTAALNRQGVQEALRRDAFDLVILGATLSKDDRHHLPYMVKKAHAGTKVLVMHAGTHHHEVDAAVDSNLSMHRILERIAALLQPEPVR
Ga0326728_1000011461	F000873	AGGGGG	MKDIHEVLRRKQAQYTQLGKQIEMLQQAAEKLREVAPLLAENDSEDDSAVLAEVDEENSNAMAAKASAQSSPAAPKPGRSVTPRWP
Ga0326728_1000011485	F009823	GGAGG	MRPYLVLAAVVLMAVAAFGQQPVPYPGACFYGCGPYIPMVTTPQVSLQQFSPNPVGATNATTGLIAGATNSTLSQIQGSTSSTYTVAVWEQGGGAPLITPDVNLWPEPIGREGRVMHDAMRGTVREERPREERAPRAEARGSWMYFTGREHTASAVLTGSEAKGVRKADHVYNNDDVTRQNDSNGNVKYDGKTEKM