Scaffold Ga0326728_10000087

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000087
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 368249
• Total Scaffold Genes: 310
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 271 (87.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000239	Metagenome / Metatranscriptome	1488	Y
F009348	Metagenome / Metatranscriptome	319	Y
F016340	Metagenome / Metatranscriptome	248	Y
F020584	Metagenome / Metatranscriptome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_10000087141	F020584	GGA	MDKLMEFQAAARNCGFVAVEESDGGTVLWLRKETPDATTKTHRRICLDSDANIATIYWMTALGKIDSQTFRNANSLQAWFALHPSE
Ga0326728_10000087227	F009348	AGGAGG	MTPKDKKPIAITSSDQELVLASLEPEQLAGLKKHLIPRRHLKGPEKLVMWSLRIYLLFMMVVVVYQILTSVHQ
Ga0326728_10000087250	F016340	AGG	MFSRKGPKKRNRAGNASLAIPVFASILFLLVCSALSAPDRLKELQDRFDHDPHADSRVKILDKLGLAQFESASKAGEAGDYSTVGFIFEKYRDNVRTVLELLRKQLPDADRHANPYRQLELQVRRGVREVEETILVVPDPVRPPLQIVRQDLISIDDELIHLLFPRRTKDPEKVPSPPEVKP
Ga0326728_10000087305	F000239	AGG	MNQSKRRVVKFLEKEIKTYTALSLFLSKKGIKEQLHAGQKKVLISPIFYKERIKEARKLVFELKKPD