Scaffold Ga0326728_10000071

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000071
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 397913
• Total Scaffold Genes: 304
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 270 (88.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020836	Metagenome / Metatranscriptome	221	Y
F028686	Metagenome / Metatranscriptome	190	Y
F046800	Metagenome / Metatranscriptome	150	Y
F048732	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_10000071180	F048732	GAGG	MTFPVGLEDVKVVRGRSTGLQVACPCGCVNFNYLDPQDTLWRCRNCRQVLSNDFPRLLERAVAREKLSNPGAAEAAPPTST
Ga0326728_10000071209	F028686	AGGAG	MPEKSFKAATIVIPDATNRTVLEEAFNEWSEQTKPTSILHIHYYHDLEAHARGYQVVYEEPWMPYLNSEVPKEEETAHLLV
Ga0326728_10000071230	F020836	AGGAGG	MRRVRGMTLLVGVGVWLLFGPQQVLAQACKEEASMVEGSKQALVELTQTVKKESLPDFGRLNHQKSVLNKLTIENSMLGELVGCLEKAAQDTTAPKEQVEAAKAQHDASAKFQEKIKHERSAIKDAQAATEAKALIEKLDLTP
Ga0326728_1000007192	F046800	GGAGG	MKRTIITCTFVLAVLGLAILFRAPRAQTVNSSTAIAAPAPAPMAVPVPARCPRIHEAVRALEAAERDMRDASHDFCGHKREAMEATHHALEELRAAEACDSCR