NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000052

Scaffold Ga0326728_10000052


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000052 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)451831
Total Scaffold Genes403 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)321 (79.65%)
Novel Protein Genes16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)12 (75.00%)
Associated Families16

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F000408Metagenome / Metatranscriptome1172Y
F000512Metagenome / Metatranscriptome1064Y
F000739Metagenome / Metatranscriptome913Y
F000775Metagenome / Metatranscriptome896Y
F000781Metagenome / Metatranscriptome895Y
F000885Metagenome / Metatranscriptome849Y
F004311Metagenome / Metatranscriptome444Y
F005283Metagenome / Metatranscriptome406Y
F007488Metagenome / Metatranscriptome350Y
F009702Metagenome / Metatranscriptome314Y
F009917Metagenome311Y
F015120Metagenome / Metatranscriptome257Y
F024502Metagenome205Y
F076450Metagenome118N
F098497Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_10000052142F009917GGAMFSISSAVVLGVLSIGAQFVVFLRWIHRRMRDDEINRVFLRDLALHHLPCIYRALYRMAERQGIALEEMPMVNFVDIQNGGRRT
Ga0326728_10000052144F007488AGGALRIREYRERDLEALRAIHAAQGFPYEFPDLRNPLFLTKLVLADDGKLEGEGKGIAGAALLRLTAEAYLLLDPKRGSPKERWGWLLGLHEATRREAWGRGLEDVHAWLPPEIAAKFGRRLQRLGWVRDDEWTPYCKRLK
Ga0326728_10000052145F000781GAGMLTVAQLAPLKDRDPYLYETLTKIVSAVNAASTNAGVDPATPSPAPTPIASVQVQAANGWFDLAITDPGAARPGLFYFAESDVTPAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQYIGSQASAPVSFGMPPVAVVGGGASGPVPLPSSGSGALANGLQRGGNGFGTPTGARIIKQTVL
Ga0326728_10000052155F000739GGAMGLAAAGISGAAGGVMTGLAAVGIDPGHFNLQAGMGATVRIGIAAALINAVIGVAAYLQKSPLPDEQ
Ga0326728_10000052157F000512GAGMIQMIRETHETPGDVARRLEMAGGRNPFGGANYRVIWGWNRLAWIGGKFEDRDANGDLLREVVELRLEPKYPQVNRWHVERWVAPETYGSPREWYAKTVECANGIRVAALGPYPERGDYEHCFTLEGPKGEFVQLTPAIVEHLARAIEWARRFPRAKHRGLLYEREARQEREYEEWAYAVMDDAAPALHGVPFVTVG
Ga0326728_10000052166F015120N/ALSDTLTDMNTIYNLFRGLFKTRYVRMLEEEVARLRGENRALLNSLLGTAGFPPVEFAEPLKSVELPRLRKRSWQQVQRKNELEAMKG
Ga0326728_10000052170F000885AGGAGMTSAKIVFIGEVAQIAGVGAVVLGVVLSLHHWGAAAALIGGISAFFVGKKLRGA
Ga0326728_10000052180F076450AGGMRSDSQGRAIQIGRYLNAPVVLNVGVTSVSVQLNQFRHYRLWGSVDLFFQFGPSGVAATLNSHPAAAKLDYLHYTDDTNTTLAAIVSSGTGVLFISEIDAQGA
Ga0326728_10000052186F000188GGAGGMSVKPEMAFDVCWEVYRGAREVLEAKRGITALTWEADSKYAWRPDLKPKLKDWVADFALAGQAALEGPERASRLVLFRLYYLGLVPYEQARHFLGLSERSWVNWDEEIRRRCGQELLRRDLFPPRKYFNGRD
Ga0326728_10000052192F005283N/AMVELTQLQMQTLERLFAAGFRPIAIAPYESALCVHRGECAAVLAPVENGGLRLLAPATVMVDGNLSVRLKKAGGDVFVWKKREVAATAERLKELEAFREELVGILEVGGRQ
Ga0326728_100000522F004311GGAGGMLRVEVHHSADSLSLRLEGRFTGNDAENTRALMARCQHPMTLVVDLTEVTFIDSVGEEVLSFFGLLGAEFVAQTSYTLDMCERLHLRLAPGPASDTNTSGASRTSAGRPRARVRQLENEK
Ga0326728_10000052226F000775GGAGGMKNLNSVFAAYLIGWGVFFLFYVTIVKRTADLRAEVERLKNSLARSKQPRLEQS
Ga0326728_10000052235F098497N/AMSPTISLPCDGCGQSASPKHLTRRLLRLEWTTRYRPVHIQALLLAGIASESDAAFLYSPEGNYEGEAANLLDALQISWAGKPGDAILTEFQKRGLFLTHVLECPLEPGTASTTAQQLLDKQLPAVIARIRRSLHPKRLILLSNELAPLAGKLTEATLGTPVFTGQYGPLPLDSGLTANQLDEFRRILPAASLP
Ga0326728_10000052303F009702N/AMIAPSLPLMTPSRPARTHSPLPCPLLYFLYLLIFLYFLAPSSRAQNLDKPLTTVDEEVTAFAYAPDGRIAFSVRRMYKSKKYDYQRDDIFLLETSGKRRRLFTGEKFTLGDKPFTYLVESFTWSPNGRILAVQLFTITADPDGGRGDEARGLLLLDDSGHEIHPVAKEPLVMNAENPLWLRDNSTLVYMTEEVAPRALFSMHYLNISSGLAGKAFEGRTFINAVRIPGSNSAIALERNRNLDGPPRLQRLELLSQDTQEVATLDSYAGGLSLSPSGTKVAYYIDNEVLEVRDLTNPKRVSRIRVGLGVLQWSADETRIYLKRTIEKKSADLAEFPIPPLTAYSPRESIPVAEPTPRILIHGLTVREFALSQDGRYLAIVLPGRRNLQIFPF
Ga0326728_10000052372F000408GGAGMSQISERTARQRSERRISVRLPLRVRGRDTRGFAFEEDTASENLCRSGAAFHTRFDLAIGSNLEIRIPMQGYPSRRFENDFETQGRVVHVGETQADGEKLVGVQFVGPRFQRVFRSESAA
Ga0326728_1000005284F024502AGGVTRERWAQIGITTQFLIVARTLGEFFRLRHVLGTSFSIAVAAPYIGGALIAACFCWAGVTFYFFRRYMLSVWIALATVVILLVYKIAVIGW
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