Scaffold Ga0326728_10000043

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000043
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 488187
• Total Scaffold Genes: 426
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 337 (79.11%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000515	Metagenome / Metatranscriptome	1062	Y
F001701	Metagenome / Metatranscriptome	649	Y
F024360	Metagenome / Metatranscriptome	206	N
F031942	Metagenome / Metatranscriptome	181	Y
F032376	Metagenome / Metatranscriptome	180	Y
F033872	Metagenome / Metatranscriptome	176	Y
F038327	Metagenome / Metatranscriptome	166	Y
F053619	Metagenome / Metatranscriptome	141	Y
F065417	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_10000043106	F053619	GAGG	MMSKRHGLWFLGLLLLAFSTAWGQDSAGQEPAGATPGGTPQQPVPAYGQDNSPPLVSDNPPISGLDLPNLQPHAAPLSYLQAGVHASQSVDSNIANSLGGSSTQSISRAEGSVELQRLWSHYDLSLDYLGGVGYYNVRGIGLKQVEELGFYQKTTWKRGELGIRNAFSYQPEGTFGSAYGAVGAEGAGLGEVASFFGGTAFGALGQVPRIMDVTLVDGVESLSPKSSITVTGGYGFLHFLQNDPETNTSFIGSSQVSGELGYSRVLGPHDQGAVVYGYQGFHFSTGVTFHGHVVQLMWGHRISGRMDLLLGAGPQFTQLNHLLVPVNQPNSSACVGKGLTLECPSNDLRISAAGQARLRYQFPKVGFAASYKHFLTSGSGFFAGAESDIVTLDATRPLGRVWNVFTDIGYTHNTRVTPSACLSANCSGVSANTYQYGFVGIGAHRNFGRNFHSYISYQFNELAFDSSFCGLAGACSRTSQRQVGTIGLDWTPRPIRLD
Ga0326728_10000043156	F033872	AGGAG	MQSCVIQDSNFRGNIELSSQSRHSFYRYSLWRANSGEHLFDGAAGDRAEALDTMRAHIRYLSAGEGLAARE
Ga0326728_10000043245	F065417	GGAGG	LRKLALLAPIFALLFTCHFAAAQQGDIMFFGGTLLSSSPSASDLLSGNIAEKGGTYLGVSGDVVGFGHRLGFNIETSWRASQANYLNQDVNYRPILTDFNALFQPKLGKRIGADLFGGIGIASTRFYFPYVTGGNPYTGYSNYTTSDHFMEDLGGGIRYYVWHHFFVRPEIHYYHIQNNTSSSSSGAGFSSGNVFRVGASIGYTIGND
Ga0326728_10000043265	F000515	N/A	MTHFPQPHPSKRAARVQLGDSVLAAIRLEDGRRTKAKLQSISVTGGLLQLQHPLGTGSFVELAFQTQSGPVHGMAELLTPMRKTATGVLQPFRFVAFEDDDHRRLRTSVDHVTDRNLLGLKSSVFVVPKTI
Ga0326728_10000043289	F001701	GGAG	MNAVKYLWAAYIATWLIHGIYLGSIARRYGRLRQRMKDLGKREE
Ga0326728_1000004348	F032376	GAG	MPGDPHSGSKVWKAPNGEISKPGENRGKVIAHRDLQPTAAFHDRENRRDLWSRLGAAYVYPVLSTQSDWSH
Ga0326728_1000004350	F038327	AGGAG	MRHSRRMSSTPLIAGLLTGLLFAILVVPLNAEDSDSRYDVSKEVTLTGTVSSVLHKPAPGMIWGSHLIVETVSGRLDASLGRFGLEGKGALSVTPGQQIELTGVMKTVRDKEVFEVRSVKANGQTHTMRNEHGIEVSPQARERAAEKGVTL
Ga0326728_1000004352	F024360	GGAGG	MHSKTFFWSVGAWVLVLALSAAGQDWPGWHYSGVINDYPVSANPTAGPWELRGPWSLNLQRFGTADFSASLTMEFSDLGSGSGFSTDARHQHTHHIKMKGATVVWNPPQTDCPTGITPFPTYTWVLEVNGTADVTGNGGSPFTGPVPLQVCLGGGPDLEISNITLVFTNLSTGPSQATDHFGPQAIHGVVRLPKEPE
Ga0326728_1000004388	F031942	GGGGG	MNSRTYKKLSTQPLLKSKATRGGTPSKFAMFTAVAVIALATVSRAGELPEAPSSSIMRMSPAMIEVAAPVSTPRIAESNPVVDKKFMSLAFISTSSTFADSYTTLFARQNWLAGKKGVCNEEVESAYLYGTHPTVARTYSVAAAKSVGSAFAAYYLRKHHSKFWSAPLIVNSVISLQGVTQNMIMCN