Scaffold Ga0326728_10000036

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000036
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 535645
• Total Scaffold Genes: 503
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 382 (75.94%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000175	Metagenome / Metatranscriptome	1756	Y
F001517	Metagenome / Metatranscriptome	679	Y
F002165	Metagenome / Metatranscriptome	588	Y
F002337	Metagenome / Metatranscriptome	569	Y
F003631	Metagenome / Metatranscriptome	476	Y
F004157	Metagenome / Metatranscriptome	450	Y
F005311	Metagenome / Metatranscriptome	405	Y
F006426	Metagenome / Metatranscriptome	373	Y
F009346	Metagenome / Metatranscriptome	319	Y
F010777	Metagenome / Metatranscriptome	299	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_10000036190	F001517	AGGAG	MTKKIETVPAHISSADETLVLASLEHDQLVGAKKHHIPRRHLKGPELVVLWSLRLYLLFMMAVVAYQVWVAAR
Ga0326728_10000036207	F010777	GGA	MGGCPSLGGEDGRSHGGAVSSGVLVMNFQRGGVATVLLVMMASLSIASCSGPKAQPVPDAERVLQAVAPADPAKFPALQETKHWSNPYLVIRPATVGLLTGVAANEEQILKPEEVLKALAQLPASAWPYGRAVAVLVDAKPTSSEQDKIALRRNRGLVAGELQSAHVTINWIPSS
Ga0326728_10000036232	F005311	GGAGG	MGSGICGAALVRAANAMLSALGGDQVNLLLPAMATASDPAGQLGLVDPGVQQVSITPVVTNNLPTGNLGPRRRIEFTLPASAIEIQLPTLGMGSAEDLFNAALGLEYDGDLFHIEAVATENFAGTAYFYVVTAVE
Ga0326728_10000036329	F002337	GGAG	MNLAFILVFAAVVALGIIVRLAVSRSLPARLNSSLATTIRPIDVEAFRNLINPAEDDYLRRRLPPAEFRSVRRARLRAIAAYVQVAGRNAGVLVRVGESALASGNPHFVESAQRLVNDALLVRRNATVALARIYIALAWPNSGVAAVRVVDRYERLSGSAMLLGRLQNPATPVRLSPR
Ga0326728_10000036399	F000175	N/A	MDEGRKRVLLISASILAARKLAQYDSGARVPATVAAIADAIRWAERIMEEIDQRHPPGRN
Ga0326728_10000036444	F006426	GAGG	VPETAPNQSPDPRRRPTLVSAGLLLVALALVVIYTSHKAFLSPLALVVVAAIGFAALLLQLRLRPDISSIRGPLWLNGTGVVFALGAVCADFLHLNSAVMVIAALAAVVFFALSGIIVLGALRKRRV
Ga0326728_10000036452	F009346	GGGGG	MSFEEALATASRDEGFKATVYAMNTLLIHKGIYTQEEFQALFVEWVEKEQRRKAPAVRRAETSSAFSA
Ga0326728_10000036483	F002165	AGGA	MPDEIGGSVEESLARQALEIERLKDALGLLGVNPCAWCKKFVRRTEPGSLFDAGELICYGCIPEWWAQRCAQLSTKERENLEGKLVFWLRDYHHAELFKDPAKLPESSQQELHIVANCLECRGTGKSLGQERCRYCDGRGTVWVIVARKR
Ga0326728_10000036487	F003631	N/A	MELLLNLVWLLLLLPAYWLWRRGAGARLERRVTALQCLLALGCAVVLLFPVISATDDLHAMRAEMEESASSKRTVRQAASEKHAGWVNRLQGPPALAASAAHVPELEAGLLEVRVSYSAPPARPCVLQAGRSPPSSLLG
Ga0326728_10000036488	F004157	GGA	MIKVGQIGLVCLVAAAMSGAGFGQAPAADSTEPGKNTNDGLVIEPTELPTTYPQGQYQVNFHGRGNFVPVLHWRVQSGALPPGIRLEDNGVLHGEAERAGEFQFVVSVKDGGQPQQAVQRGFVIKVVEAITLAWKNPPRVNVNRIEGSVEVSNTTADDIDLTFDVKAVAENGRATEIGYQHFPLKRGTERMALPFGETLPHGAYVIYVNVAGEVARRNAIYHERLQTPAPLQVVVGP