Scaffold Ga0326728_10000032

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000032
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 559223
• Total Scaffold Genes: 512
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 325 (63.48%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000359	Metagenome / Metatranscriptome	1236	Y
F001063	Metagenome / Metatranscriptome	789	Y
F001289	Metagenome / Metatranscriptome	730	Y
F003396	Metagenome / Metatranscriptome	489	Y
F014587	Metagenome / Metatranscriptome	261	Y
F015508	Metagenome	254	Y
F016551	Metagenome / Metatranscriptome	246	Y
F045632	Metagenome / Metatranscriptome	152	Y
F095904	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_10000032130	F045632	N/A	MPKRKLRIVKQGLGVCERCNAQFRDTDIQVQFDAHKCKPIDSSQNALRIVRESTEGK
Ga0326728_10000032264	F001063	GGAGG	METMLQGLVIVGGLTFSLAASLLIEELIFGRIAQLAFVRRPEKERKTKT
Ga0326728_10000032289	F014587	GGA	MSQDAVKQIERAIGSLTPREIEELYAWLDQHYPPPIDARVQSDLSAGRLDTAIQRALEDEKNGRVQPL
Ga0326728_10000032309	F016551	GGA	MYSMPADVGSAEGEQFMSIEEVSVERFAQLFHHYHQALSDDSGSASHLRTGQAWANVPAGEKNRLITAARLALLEVEVVPTERPSRRYFAKPGQAEWGC
Ga0326728_10000032390	F001289	GAGG	MKNPYDVLRAKEQELIKVRKEMDALRIAAKLLGAEDRKLTSSNEGQPLTRVVEMP
Ga0326728_10000032452	F015508	AGTAGG	MSKTVLAAALCLMAVAAFAQKPSAGATKIDDDFIHRQFGDQFTLIPTLAPAFGDLDGDGIEDAVIAARCKNPMLDQGEHNFRVIDPYNSFFGYGNPAVTTTFSEGDPALRGLVMLIIHGSGPEGWRSAKPKAKYVIVNLPYRAIYVRKFQFKKKNIEALYIEEAGSFGSSSAVFFDGKKFQYVPMGGDME
Ga0326728_10000032459	F003396	N/A	MPKKRKKRRFSAATVVREMARERVGSPKPSQLVPAKTTKAEKHKPTLGKLLSDE
Ga0326728_1000003260	F000359	AGGAG	MSGQVVLYFEDQADALRFALAAGGVMAGETKASSELVQKTARVSRIRLNATNTGKGKSGAPEQAA
Ga0326728_1000003271	F095904	GGAG	MKRKSVLALTFVFASAFALVLLIAPVQAQQSCKAFHAFVQGSLPSSNQFAPTDTWGGPIFVNLGGEFLQGGLSGNDGTEYPHGPVSIFKGGEYKVCLTSAASWGGPNDCSDSLTYDVPRAVVIWPAGKSLGSYKATAKVVKGTGRFASASGQLEIEGPFILWTDSNSPFGVSGRWNSEFKGGVCGI