Scaffold Ga0326728_10000031

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000031
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 559502
• Total Scaffold Genes: 515
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 392 (76.12%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000249	Metagenome / Metatranscriptome	1459	Y
F000901	Metagenome / Metatranscriptome	844	Y
F001709	Metagenome / Metatranscriptome	648	Y
F003398	Metagenome / Metatranscriptome	489	Y
F004328	Metagenome / Metatranscriptome	443	Y
F005244	Metagenome / Metatranscriptome	407	Y
F006353	Metagenome / Metatranscriptome	375	Y
F017346	Metagenome / Metatranscriptome	241	Y
F019610	Metagenome / Metatranscriptome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_10000031104	F004328	GGA	MPDQTPNPMSVPPESPSAAAVSASPTPQRGPTIRIGDEFGTAKRNLPPVRILLIALAGVLVLAGIVSFLQRAKPQGAGSLDFVTAVQIPNQNASLVALTFTLHNSGEKPLWVHHIQGKIVTSTGELTSDAVSAVDFDRYYQAFPALKENVQPALAPEDKLQPGQELKRTVIVGFPVTLDAFNQRKSVSVVIHPYDQPVPVTLTK
Ga0326728_10000031205	F000901	GGAG	MALHAAAYGMYSQNVPLNDVVHTLNQAGFDNENICMMLSPTHPIAQLVRDASLFSSEREANAATAGLIGWLSEFGAVMIPTVGFFIRSQAFFHALMVARDTPAFCGNSNTLVGLGFSDDEADRFEDELRHLGVLVYVSCSESAKISWACEVLRHTGAREASTLRETTSLSATAAA
Ga0326728_10000031267	F000249	GGAGG	MKTLTWILVFPLLICALSWAQSSPAPTATQDSGIQSSAPEEKMFFPRDMFWGWAQFDLAPPHNEIDPNICAGNAGQYGGVNAPCSMFARYMLSGMLEVRPFGRGQLRRFMVFGAPSFLFGKTIPQTLYTWSPDAIGIEHSWGVGIFIAKGFEFRVTQHFLFDRLGARDTYLGVADLGNNGPWGRYATVGVRKSFGTRRW
Ga0326728_10000031268	F001709	GGA	MPQEVSVSYQAIKSKVYRLIDTLVVGEKSEVEVQESIRRWWELIHPADRPIAQKYLLLVLGRSCQALDAIEEGLTDATNHDAFRPDPAKAFKLVERVVKQTSKSAAFSSSM
Ga0326728_10000031281	F017346	AGCAG	MGIFDSFRKEEVTGTRVLVGQLFPKFEEHFKSDLRVYKRFYPAASGATFMSVAELRGAASHNYDVLHLFCDVDPSGVITDASGDRITGTELLKAAVDSGVKLLWIGNDNPQEAYDAGFKTKGLKINVVLTLRRLGSNTSLFLDSLLAKMQAGETFAKAWSVASQPEGKSVQPDVPHTISALGRGSVVLN
Ga0326728_10000031283	F019610	GAGG	MRAYLAKLPPKAQMLLAIPLIAVAYPVVMILLPAIIRAIVPEVVRSVLSLL
Ga0326728_1000003129	F005244	N/A	MSIFDEKYRVVGVENDRLRLRGVHSGDVLTILNPEPEFPISQEDYPVGKLIALTDPSKALPN
Ga0326728_10000031337	F006353	GAGG	MKASLLLPVVICLTLLLLAQPAPTTLYAESFRQGPTHVIEEKFDVKLTPQDRTYRERIKDLHGDDRYLLSFVPQGPEGDTEITSWQVKLADLHHSTYENVLMSSQGPSSNPKDALWRLEPSTFARVPLTAKRIIKVDSFYVVLQVKAHHFTPPDSPYLDSMTVSVEFTDTDPRTSGGTQK
Ga0326728_10000031427	F003398	N/A	MSTIDPPSICEICEHVKHLGYANSGRIRLYGEEFEVVSDPFLEDDGIAVRVKSKKNSTVRVLQLPATVVQSVKSRSVKAA