NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000015

Scaffold Ga0326728_10000015


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000015 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)735481
Total Scaffold Genes676 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)452 (66.86%)
Novel Protein Genes16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Associated Families16

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000439Metagenome / Metatranscriptome1137Y
F000477Metagenome / Metatranscriptome1097Y
F000526Metagenome / Metatranscriptome1049Y
F000840Metagenome / Metatranscriptome866Y
F001289Metagenome / Metatranscriptome730Y
F001385Metagenome / Metatranscriptome709Y
F001499Metagenome / Metatranscriptome682Y
F002480Metagenome / Metatranscriptome555Y
F008980Metagenome / Metatranscriptome325Y
F013785Metagenome / Metatranscriptome268Y
F014420Metagenome / Metatranscriptome263Y
F016551Metagenome / Metatranscriptome246Y
F046597Metagenome / Metatranscriptome151Y
F056871Metagenome / Metatranscriptome137Y
F058504Metagenome / Metatranscriptome135N
F089724Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1000001510F008980AGGAMISAANKIFPEPVAGENVGNVFSQHREALEWLANFLIGDERIAAACLVDAGALAESENPGFQDWLSEWVCLATIRSAAQIQQRRIAQLASTYKQRSCIHGGHRALSSDWQEILVEESNILIARLDVLCRFALVICGLEKRSAHEAALLLGVDETCVEGAYCAAIKFLEVVGCEQFQRQNDLAAVFN
Ga0326728_1000001511F046597AGGMLRVETQESVDALIFRLEGRFTGEGAEHVRTLVARCDNEMRLVIDLTEVLFIDALGERVLSFLKRLGAQFVAETSYSRDICERLHLPLV
Ga0326728_10000015112F013785N/AMGPAPEGALNFAAWQMIRDVVGAQPTLTEAAWENLHATAAETLLPATGTDGVQPISRGGANSYLEF
Ga0326728_1000001512F089724GGAGGMKWPDILDILERPSHRYATVEDVRKIFADYHDALHWLAGFLVGDKLAPACIIDACNIAERQGPVFHEWLAHWAARATLRCALQMQGADIAKLAPTYERFERVDEKRSPLSPKDLQLLIEESDVLPTRLDVLCRFVLVMHGIAKESYGEVAAHLGVSPSAVERAYCVAYDTLHLTSERMLCNAEIPVALSP
Ga0326728_10000015228F000477GGAGMPEMATKKFTPEIDAKLYEEMVAVAERNGQTKRHVLEQALRFYLRNVVPSQHLVRAEVMDAFEQSVARNRDLLERLAK
Ga0326728_1000001528F014420AGGAGGMTSNSSPEPTRGWRTLYKAALAETDVQKLPLRIEETRRALVLRSRELFSTTPNYDGESEAIEDAMYALKALENCLKLNTKDRRRTSRVA
Ga0326728_10000015362F001289GAGGMKNPYEVLRAKEQELIRIRKEMDALRIAVRLLGAEDKDKGAAGNGEAQPQLTRVVEMP
Ga0326728_10000015393F058504N/ALGRFLRVRHRQQAFQNTRGPPLKSLPIAVFLLLVTSINVQAEAAFAGRGELPNSPSTSFWTKANTTLLALDAAAKGADFYYTMRGMEHPGLAVEADPIARPFVSHGNALAVGYFSGLLVIDAAASYELHKHHHERLSKAVLIFGIVDNGYGAQHDGRQF
Ga0326728_10000015509F000439GGAGGMEIGKSNHDGVHEMKASGSEAPVHQVVAAAREELRQLLQQRAEIMKRIGTVKQTIAGLANLFGEDALGDDLMELLDRKPNGRQPGFTKACRKVLMEVHRPLGAREMCAELERQAPAILSRHKDPLASVTTVLNRLVDYGEARSLTNERGRRVWEWVSDREQAANQLADRIPA
Ga0326728_10000015515F000526AGGAGMDGNILGFAAVVLSLGIPMAAMYTFYRVRKLRTDERLAALARGVNVPMEPELTEAARSRRYGILLASGALGYIACCVLMGHADRNAWTAAALGVVPLMIGLGYFADFALIRRDLRTQ
Ga0326728_10000015529F000840GAGMITLEERIARTQRLLRRLEEDQPYLRARLSALGAEHRESAHAFAERVRVEAEAELQRLLAERTPALEWVAPQPAD
Ga0326728_10000015542F002480AGGMSSSPQIRPPNRVPRAHLEGHNPTVLRLPNGQSIGGNLQVISLTGGLLSLPKPVVEGSQVKMIFLTGTGAVLGGAEMLPPVNAGQQPFRFVAIAPDDQRRIGALIGQQTHRKEFEQAWMEKLRAASANQNEPRRWRPLVAAAVGALMISLAAAAYLLHFRVHIGLLKQIGF
Ga0326728_10000015614F016551GGAMSIQEVSAERFAQLFHQYQHALANDFNGASSVHATDTWADVPPSEKSLMIAAARLALLEVELLPSERQSRRYFAKPGEAEWGC
Ga0326728_10000015650F001499AGGAGVEHIDPAVVKRFDTRSSRPCEFCREFDPHFPNRRPLDQMVVSTRKAVAGSHLTEDGYVRHRILELRKMSARAPLTAA
Ga0326728_10000015652F056871N/AMSQLSTNGGLLSLDAPLDESIGVTVVFHIGVTSVRSRARMMFPMWATKGCLQPFRFVDLSEESRTGLTRELEALVRAGASEETEKTE
Ga0326728_10000015666F001385GAGMASSVSSVYSVVATFAGNENRSSLKVTRETQEPLPPGVRAIAALYAFCGIYLAITATVMLVRPGAISMSAGAPLLFGLELAGPYMFLLMALAGAAVAWGLIRLNNITRHIAQLIAITGIVMLVPSVSAAAVSANVKALIPGGLGIIVRVLVAWYLAQADVAGQFHRTG
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