Scaffold Ga0326728_10000012

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000012
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 850090
• Total Scaffold Genes: 720
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 572 (79.44%)
• Novel Protein Genes: 29
• Novel Protein Genes with Ribosome Binding Sites (RBS): 28 (96.55%)
• Associated Families: 29

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000078	Metagenome / Metatranscriptome	2550	Y
F001485	Metagenome / Metatranscriptome	686	Y
F001558	Metagenome / Metatranscriptome	671	Y
F001643	Metagenome / Metatranscriptome	659	Y
F001829	Metagenome / Metatranscriptome	629	Y
F001893	Metagenome / Metatranscriptome	621	Y
F002101	Metagenome / Metatranscriptome	593	Y
F003233	Metagenome / Metatranscriptome	499	Y
F003337	Metagenome / Metatranscriptome	493	Y
F005865	Metagenome	388	Y
F006676	Metagenome / Metatranscriptome	367	Y
F009563	Metagenome / Metatranscriptome	316	Y
F010114	Metagenome / Metatranscriptome	308	Y
F014420	Metagenome / Metatranscriptome	263	Y
F017683	Metagenome / Metatranscriptome	239	Y
F017708	Metagenome	239	Y
F018460	Metagenome / Metatranscriptome	235	Y
F020070	Metagenome	226	Y
F024747	Metagenome / Metatranscriptome	204	Y
F027340	Metagenome / Metatranscriptome	195	Y
F029822	Metagenome / Metatranscriptome	187	Y
F033229	Metagenome / Metatranscriptome	178	Y
F035035	Metagenome	173	Y
F042484	Metagenome / Metatranscriptome	158	Y
F046597	Metagenome / Metatranscriptome	151	Y
F048483	Metagenome	148	Y
F051011	Metagenome / Metatranscriptome	144	Y
F061167	Metagenome / Metatranscriptome	132	Y
F105952	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_10000012101	F029822	AGGAG	VKKTLSTVALLLALSLTVFAANPKKPAVSQHRAGDSSILLQEPKNNPHSVPPSLCSPCLFYGGDLNPGDINAVGFSDENTLLILGGSSTYAAVNIPTGVTASVYGILFNVQADAAFDPITASYDIRTGISDGDGGISIASGSGTAVIQPTGRNFIGLNEYTVAVSWSTPVTLTPGEYWFNLTPQCLNTLDGSCSVFRQFVSNTTQGANDIHGNWQPVHEAFLNSLFFDVTWTNWCDASLGFNPTQCGYVSFGLRGTK
Ga0326728_1000001211	F006676	GAG	MEDGINPDRKKQSQSFRWLHEIDQILVVGMKYGPTGTQEAVKRVRQLTPELVPAQVWHRMRHLREKERGKSAAPVDWSESAIEILREGYRSGGRKKTEAIKIVRALHPGVAGYVVSRFARSQGWLDKQQADKRKGDRRPWTSEEEQELFARAGYEPVKAIAEKLKRSEQSVRFRLKGRAISARVTDGWSLRRIQQTLHISHRRLQRLIGSGLLRVRDPRVTAISLAEFCRIHGTVALRGIEQKTDAAVCDENKGYSWGRVAKLLGVTAVEVGKWIADGELKLMDTSVTDRAFEAFCLQHGSELNFGLMDPAVAKWLIDEYGLQTSTTQRTFPVASSQKQALVVRPCPKCRRSIRGNGYFAHIPACRGGMSQGNPEQLGVDQQAS
Ga0326728_1000001212	F005865	GAGG	MPAPEPGPEWVLSGANPRLDSATESELSKAAQSAWPKALAHVRQVQSRNPFDDDGILVAEVWESVLQSVSRTLDRMNGRRGEIGDLEAYLLGSFYHRLRRALKKEQRREETIHLVSSAQELEVLGKTSQAEQHDIEGTLHAQEILDRMDDWSRKVWIAREYGYTWKHIGRVLGVPGDSVMLRFRRRMKILRARLTGGR
Ga0326728_1000001213	F009563	GAGG	VVTTDTAVLDLRERSVARGQSQSEAGQVPLEIPRTAKHLILDLPIGSKEGAYEVGLLSDTGDQLLRATGMPELHDHIMGLRVDVDFSSIRPGEYFLGVRQASLGWTRYPIRVF
Ga0326728_10000012159	F003337	GGA	MSVPGLRSFISCIMVLLLPLSLVAADAGSAILHSEGGVWLNGTEISGSTAVFPGDSVETKPGFVANLDAEGSSVLIQPESVLKFEGSFLSLEHGSVSVGTSTLMSVHVNCIKVDPITNERTQYDVTNVNSTVQVIAHKNDVKIEEGSSLRKTSSRSALAQSATVHEGEQAKRDETQACGAGRPPESPANGLNQKWLEIGGGAVAGVVALCLLLCTSKGKSSVSPSQP
Ga0326728_10000012161	F002101	AGGAG	MTTPVIALPVSIAEGSSLKKKRVLLLDTSQTKRDLRADVMRKLGIEVDCAADVLEARCWWRADLYNLVLINGIEEKEERDKFCSDIRSANPPQRIAFFVGGPEYLALAPHSDSALAAEDADALHKEMVAALLAQGSQHSSQRWGILEACKRISSVRSVSEARSRAIRETPRPSRWAEAIEHHSASEEIHSQPTFAKTITAEREGLV
Ga0326728_10000012177	F001829	GAGG	MKKRYLHLSVYPCDTCTGPVIAGSTAVRENEISKEIDIRPVGAICLSCGHRQEKATEPARPCHVLPIAWEPVGAIQARSLKGAFVEALNRAEPH
Ga0326728_10000012200	F027340	AGGAGG	MFKHPALFALVGIVALGIPGNPTSTSGSWHVDARHSDAQLITDGTTDYGKIKINVALGVARVNGMLILDNSDPTKSSVNFRIYPATSMAPPIDEDGQFLSHWVSDLANHTLVCFHSKTVNRRADGRLQATGTLVLTRVDRNVEVATGEAYAGPVYGPPILHRVSHEATFVFDFPADGKGQKDGEVTASGSTSMFREDFPQLVKTVVSTYWPPVVQDEHCQTSDANEAYSGSQCTGTFLETPALPEAPHAANGEDVGVQQNFNAVVGDHLTIVVRLRLAAKSSGEPAAAGGD
Ga0326728_10000012240	F051011	GAGG	MDPANSFDHVVAILGIRPDQYRDSLELKEWVQKNKDQKYVPTELLKHWGLEDDEAA
Ga0326728_10000012292	F001893	GGCGG	MGIIKACVGFLAIAAVVVGLFQVAPPMLANYSFSDDLKTIAMMDSANLQKTDEDVRNDVIRKAKEHDLPIEPKQVTVQRINSPGLSAVYVAADYTVTISLPGYSFDMHFNPTSGNKGF
Ga0326728_10000012298	F001485	N/A	LNFLTGPVTTYNLLMERKIFWIVFMVLGLLADFLLPIWWGLAATIPIAFIAWWVAYRSDW
Ga0326728_10000012352	F000078	AGGAG	LENMYCLRCNRPIETGQKSVAVYLFAQTVGIKPRQKSAAQRICFCPQCSVSLAMGPPPEGALNMAAYDMIRELVASDPALNQAAWETLSAVLGSLPPTGTTGPRLSPALGGYFEF
Ga0326728_10000012411	F046597	AGG	MLRVEMRDSVNAFIFRLEGRFTGEGAEHVRTLVTRCHTEMRLVVDLTEITYVDIVGEEVLSFLKRLGAVFLAETSYALDVCERLRLPLVRKRKSRAQVENAPVAESPGV
Ga0326728_10000012446	F061167	GAGG	MARASSGADALAMMRTQIFDVLVMDCAQGTLDIQNFTAKAQGLQPSLAVFLADEWGDELATGLEELGNVLTMLEDDERVRLAVESRIA
Ga0326728_10000012464	F001643	AGGGGG	MLGELTNIPTDTLIDMLYIILAGEVAISASDAAEIEQIQRELQCRGDEQCWSFQTVN
Ga0326728_10000012465	F020070	GAG	MGGRPIGMPDSNTYIRSASVALPPADGCRASSVVALGCVLVVIGAYCFCASAFAQTSDSQTAEVPTTSWTATTDLKSDDLLPERLPARISESHSQNGNLMLDKRSVEIRGTDGHFEPYQDIETETLTVDASTVRTTMRTLTQDVNGRKTLVQVTEEEKHILPGEDSNIVRVTYNPDVNGRLQAVQREIAETKKIGKDLEETNTTVMVTNINGGLAPAFKTHELRKRAANDTVETEKTTWLPDGNGKWQVSEVRQATTRQEGTNRTTEEHISRLDSEGKLGEVSQVVSQESESPSGEKRSVVETYSIDVPGTPRDGSLHLVERKTSIESSSSTGERATEEQVEQTNPGDPGAGLRVSVVVDGRMVPGPSGEQSTVIIRARDSNGSFGIVSVDMTKSDRIPTIQVQQPPAEKP
Ga0326728_10000012466	F048483	AGGAGG	MCSPVLTVQAAPISASPVQGACCDTYPPIHEEYVTEFNHVRMNWVLVDDTKGNLRAQVRWEVDR
Ga0326728_10000012472	F105952	GGAGG	VSTRRGARNAKRVHSIGTSAAPVSRETVDSKITVLAVEQALTELGIHARLSDIVAKAQSMENGIIQSRSRRKREQVC
Ga0326728_10000012474	F033229	AGGAG	MYCTKSLNGVPTIQRDGQNVLGVWNQNWEFANEICDLLNSLEDDPHIFLTEHDRKWLKAMDRAFRKVQHA
Ga0326728_10000012475	F010114	GAGG	MIIEMNEDDTRLLHTVLLGQAQEHLSYADTSEVAERLYKLATKFEQPARELPT
Ga0326728_10000012483	F017708	AGGAG	MAKVIEFYIPKNFRKPLRAVAPPQLGKIIEFCQQTKRSA
Ga0326728_10000012486	F014420	GGAGG	MSESGETFRNWPGLYKAALFETDTEKIPSRIEEARRALVFRSRELFETSPNYGGETEAIETALYALQALENCLKSNTKDRRRAARAG
Ga0326728_10000012500	F001558	GAGG	MLRVQTQESDDALTCRLEGRFTGKGAEEVRALVTRCDGKLELVVDLTDVMFIDAIGEEVLLFVKRLGAQFVAETSYPRDVCERLQLPLVGSQKT
Ga0326728_10000012508	F003233	AGGAG	MKSRQILIAMVMLATLWHTAGAQPKKRSIQAEAPPLDSVLANASIQSNAVLPDLIAVKPMMPLGPQDVLKSYEIAMSVVADKTSADFSVIVQAQQANQITREQAEYLLQQIYQMAMMQYQVLGALHDVLRHDIDEASQEGTQSPKTSSSSTVLVVPFPGSVSASR
Ga0326728_10000012509	F018460	AGGAG	MLRRLIPVLTLCLATFPALCQSASKYQIGFITDVKPRQSAGDAASDPATYDVSVKVGDTIYVVRYTQPLGEIPAKYATGHELLVLVGQHTITYNDILGRSLQVPIESQRPAAEHKDSK
Ga0326728_10000012519	F035035	AGGAG	MKSFTLICFATLALAGGALAQKDMTDKSSGAVDQPTGLRTVVGCLSKTDKTYVITGGAPGPKQFRIVSGDVSSLKGKIGHTIEVVGTVSKNDALANQNGIYNEGTTTGVGYLTIDVQKIKQIYGNCSGAGKEWAGDHM
Ga0326728_10000012668	F042484	GGAG	MKKPFLLHRCLLAAAALTAFCIPAWGQGNIRTVLFVKVKMGQEENWKAAVKDYAATVKKAGSEQGFTVWESSASGPAQHAVVWYSAKWKEIDEQDPKLKPVEADMARLFERLDAVTESLETWVDEMQPEMMIRSTQIPPMVRVARTKVISGKMEEMKAVFREQIVPAMKKSGATDYGVAVARFGTPSNEFHSYLGLNGWADLDGPIGTEKGMSAAEYKAFLAKVSSLIESTEWSMWKFEPELSYVVAPK
Ga0326728_10000012669	F024747	GAG	MPYLPQPRATRRAPRTSFAETTPVVLRCKDGRRVPGKLQVISLSGGLLCLPQPLDQGCQVKVMFLTRKGSVLGAAEMLSPISWGTQPFKFVKLYDDDERRLNAAIQLSVEQNRLQRVQMDNPRAW
Ga0326728_10000012670	F017683	AGGAG	MNLLKMFLGRGCSHRFTWPRIDDHGRHYQICLLCGTAYEYDWRMMRRTDRLLVADVRHA