NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326728_10000009

Scaffold Ga0326728_10000009


Overview

Basic Information
Taxon OID3300033402 Open in IMG/M
Scaffold IDGa0326728_10000009 Open in IMG/M
Source Dataset NameLab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)952534
Total Scaffold Genes837 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)660 (78.85%)
Novel Protein Genes21 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)19 (90.48%)
Associated Families21

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.5488Long. (o)-76.2662Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000238Metagenome / Metatranscriptome1494Y
F000323Metagenome / Metatranscriptome1300Y
F000378Metagenome / Metatranscriptome1211Y
F000380Metagenome / Metatranscriptome1210Y
F000414Metagenome / Metatranscriptome1169Y
F000912Metagenome / Metatranscriptome839Y
F000954Metagenome / Metatranscriptome822Y
F001364Metagenome / Metatranscriptome713Y
F001511Metagenome / Metatranscriptome680Y
F001867Metagenome / Metatranscriptome624Y
F001885Metagenome / Metatranscriptome622Y
F002075Metagenome / Metatranscriptome596Y
F002108Metagenome / Metatranscriptome592Y
F002248Metagenome / Metatranscriptome578Y
F002346Metagenome / Metatranscriptome568Y
F005538Metagenome / Metatranscriptome397Y
F006072Metagenome / Metatranscriptome382Y
F006274Metagenome / Metatranscriptome377Y
F013560Metagenome / Metatranscriptome270Y
F023648Metagenome / Metatranscriptome209Y
F103606Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0326728_1000000914F001885GGAGMEAAALETMRELNAIVSRKQYGRDLLYRADEANYLLLRYWNSEQARGAALEDPELLRCWARLGNEIRILKVYEKLEEVGV
Ga0326728_10000009206F000378GGAGGMEDRAPDVSSSATQPSLSSQRVTSRHFEGRGAWVLTAYGISGLALFGLLAYFFSDFIAH
Ga0326728_10000009231F002108AGGTGGMSSTPEPALESSPSNAASVTPRPFRVKLRGSILALIRLPNRREVRGKLHQISTTGGLLNVEAPLDEKVKVELIFHLGETTIREKVEMLFPMWATQGWLQPFRFVDLPEANKNVLETNLQAFVKQTQG
Ga0326728_10000009241F006072GGAGGVSKTAAVVLAFLSLMLFATASRAQLLPSGNVYVGVAYGDSVDVIPTNRYTFRGWNASFEDFPLTRYPHLGVVLDGSGFYRVGIQQYNLFLGPRLSFNYGKWRPFVHIMGGAQRMTSDGFTHYPIAEDAGGGVDRKFQFLFMKHFSWRLQFDYMRTHLLSATQNDIRGSTGLVWRF
Ga0326728_10000009275F000414AGGAGMSAPSRRPEIRRRRARQHKIATLRKRLASAQSDADRSRVTAKLHKLAIASPGQPLVK
Ga0326728_1000000928F023648AGGAMRNGRERLLAALLLVCLIAATHVRPSDARARDVRAQSAPACQFVSFKVHLDAGDNFERELGGGLLFRVRSQKDPGWFLDIVPAEENTKDYIYPVNLPLRFNPNQTLGAGFGETVKSSLAHPHEMYFLLNRSDYDRVFGLIGNVLWSYQTSDPDKALSDYTNAIDDARKGWLRVTVSSYKTDSKGSLTRIKLRVEFTTPPDFQFAPHLNPFPWPCHP
Ga0326728_10000009296F000323GGAGGMRKIGFAVLLLSACFVLAQDSNSNMSQPSSKDSKGEVTLRGCVSRSSGDYILMKQDPAVTYELQGSHKIKLRHYLGQRVEVTGSESPTLASSSDAMNKVGSAAPVTLNITSIKTLDKDCSVRDVSR
Ga0326728_1000000936F000912GGAMSLDAFVRCTCIRDGKAKPHPLPDRLTFDESGEPTLTGDPTEEEWDAHDQWMGESCEHEGYLLSMFLGNITRVGNLRSFLRGLQGSPGPKFPMLLEKVLYDGTHTGDWISSKDAAKLLKEVDTVLHSSDILADSEKEFFTNMKQLSEASVATGNPIMF
Ga0326728_10000009416F000954N/AMVLSLSPMKKVLLVAAAVVLAPVLLVGVVVFAAGDWRQIGATPGGDQVLVSSVTAQKNGLRTAWIRVEYKEPTKLPQGGPFVELRARVHFNCASGSAVPNSEWFYSRDRSGKLIVSKKTRRDDQFGQVAEGAFGEIARDYVCKQR
Ga0326728_10000009440F002346GAGGMKLLDRFCAGVLFVLAIAHSLLVPRNYTGRIWIFGTCLALLFTAMLNILRIRNGPEVKGLKLFCIAANLTMLVFGISLMLSIGMSRTLHNPQVPLLTALLLVETAFSLEKKA
Ga0326728_10000009443F001867GAGGVTRHSPDQLWFQKYFEFHCDDCGCETGFRSRRRTFSERYLLPIFLLQPVRCAECFRRDYRLIFIPVRERLSDVTGKHPVSSVSHRDTRNVA
Ga0326728_1000000946F006274N/AVVKAHQREREDSSARKRRHHAIYATETSGLLLIALLLLVLTVIRYWHAIHWSAR
Ga0326728_10000009555F001364AGGAGGMLGGLLFVVCVILQFHYHDAIPWYIWLLAFIAQCVAFGEPAMTAASKKS
Ga0326728_10000009560F013560GGAGGMKVLVVEAEDAVLKATGIMLNKLGYKVGLALNCNEGFRIYCDNGPHDVVLIALKFLRSSNAGGAKFIEALRQKNPKQKFAFITASPVLKKPFSLQELDDFMGAFRRPASSRFE
Ga0326728_10000009561F103606AGGVTDIHSKRTDTRRRFRATLRWVARLILLSIVGSWLFLYVDSVYQRRCAESLFADLRSLDFSNAGFAEVRDIMIRNGGTAIQRNLQPWFPDLGDLMVGPDGSVSYERSWSTCNPQNCTFLLRIMTRLPRIPLLDRKARFFYTTLPYIGIRSWVVYAQFDVRNGKLDRSHTGVGEYRMERVDYNAYRQLVPRGYEVVTRRDAASFEYGPCSRQDYQVWVSHGGFKFPEKALATCVVQSARVPVKRACDVHLRCLNSLFRSCRFDELAPSAWADYLANDGAGTGDPHK
Ga0326728_10000009637F002248AGGAGMDRRQQSRVFVDLPVQIWGMDSNSRPFMQPASLRTISGRGATLQCVDARLKPGDVVDVLYEGTKAQFRIVWCGKPGTEMAGEVGVENLSTEVTLWDFDPKRCAAAVGQG
Ga0326728_10000009665F005538GGAMDFQVNDQTYFLSLAEDERRWRVFVSTPTGAWRIPVYEDAAESEPLVVLQEEKHRMPN
Ga0326728_10000009708F002075GAGGVRVPSPSFHPKAASWRELYTAALFETDRNRVPARIADAEQAIVARARELFSAGNDTIEEDQALDDALYALRALQSCLQLQAVAA
Ga0326728_1000000974F000380GGAGGMPIQPQEQSTLNVKLVHFTKQNSPDEPVQVAFAVTDDQGKEEIITGEVPYSYDLFHLFQEAGWLNIRRGVASIRENRTQRRAMSA
Ga0326728_10000009797F001511GGAGMFEDVDGMEVFVNPERVIWVREYPGEVTVISCGHDDKFKVRLSPALTVAALGKSVR
Ga0326728_1000000986F000238AGGMPPKPHARPPRWYAIPARVLLVTFIGTLLSFAISLFVGIVGTVLVSAMRGNAHPDMTLAYRHIALPFAVVAGSIIFVLALTMEIRHYRQMKALAAIERVS
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