Scaffold Ga0326728_10000005

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000005
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1269636
• Total Scaffold Genes: 1346
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1021 (75.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014730	Metagenome / Metatranscriptome	260	Y
F020727	Metagenome / Metatranscriptome	222	Y
F034976	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_100000051287	F020727	GGA	MKYQVLVKTISGKGGEFWGAFNKMPTEPMKGVMVESSWSLYGYWDFVIFFKADSNENSLHFIGEVLRAMPGIADTSTSPMTVLKEHKKQ
Ga0326728_10000005698	F014730	N/A	MGEDILKIYEAMVFKREIRTRSGLDAKMIDTINDGVILSIDENLVNSNDLLLIKNFVDQNKLSLLIDSERYFISTNALKASSQSICDI
Ga0326728_10000005979	F034976	GGAG	MVSNPVRCQKCGKPVGYVTVLAKGVLGRQQPVENVKVIAICMECAG