Scaffold Ga0326728_10000004

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000004
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1371642
• Total Scaffold Genes: 1171
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 791 (67.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009471	Metagenome / Metatranscriptome	317	Y
F011810	Metagenome / Metatranscriptome	287	Y
F015124	Metagenome / Metatranscriptome	257	Y
F057044	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_10000004189	F015124	AGAAGG	MILLVTTSSRAKECAASLEQGTGHKTHLASTVPQAVSKLQSADYDGLAIDQSVLESDFRAFDTLLNHCGIAMPLHVNLALHSTERVVREVQVALRRSEKERLLATRAAGQLLRNQLRSEITGILLNSELALRQTAISPEVAEKLKSVRELAEKMRSQLQIS
Ga0326728_10000004379	F057044	AGGA	MQDEHDSMRQMVNLGLTGTLLGVVARFITHANIAVLIGTVGGLLVAFFLAALHGEQV
Ga0326728_10000004450	F009471	GGAGG	MAATADPVTETDQRERIWFFPHKFWQATKNMPKDEAANLMEEVERYAAARDFQALSKYPFVFVGDPYKKKKHNSAA
Ga0326728_10000004853	F011810	N/A	MATRIVFITIALALIGTGIWAYHHDENLRKNAPLVNLGDPNEVVRQLLGDPTSEGPCGSLTPTPKGCTDEYVYRYWYTIFQPQHEVIWFDHAGKVLGEQHVRSPL