Scaffold Ga0326728_10000003

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000003
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2112322
• Total Scaffold Genes: 1843
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1191 (64.62%)
• Novel Protein Genes: 31
• Novel Protein Genes with Ribosome Binding Sites (RBS): 20 (64.52%)
• Associated Families: 31

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000036	Metagenome / Metatranscriptome	4352	Y
F000174	Metagenome / Metatranscriptome	1764	Y
F000372	Metagenome / Metatranscriptome	1220	Y
F000439	Metagenome / Metatranscriptome	1137	Y
F000477	Metagenome / Metatranscriptome	1097	Y
F000482	Metagenome / Metatranscriptome	1089	Y
F000525	Metagenome / Metatranscriptome	1049	Y
F000526	Metagenome / Metatranscriptome	1049	Y
F000743	Metagenome / Metatranscriptome	910	Y
F001303	Metagenome / Metatranscriptome	727	Y
F001499	Metagenome / Metatranscriptome	682	Y
F002363	Metagenome / Metatranscriptome	567	Y
F002927	Metagenome / Metatranscriptome	520	Y
F003498	Metagenome / Metatranscriptome	483	Y
F006598	Metagenome	369	Y
F007434	Metagenome / Metatranscriptome	351	Y
F010868	Metagenome / Metatranscriptome	298	Y
F010931	Metagenome / Metatranscriptome	297	Y
F012173	Metagenome / Metatranscriptome	283	Y
F017549	Metagenome	240	Y
F024629	Metagenome / Metatranscriptome	205	Y
F026659	Metagenome / Metatranscriptome	197	Y
F040251	Metagenome	162	Y
F052109	Metagenome / Metatranscriptome	143	Y
F053983	Metagenome / Metatranscriptome	140	Y
F055025	Metagenome / Metatranscriptome	139	Y
F066959	Metagenome / Metatranscriptome	126	Y
F074490	Metagenome / Metatranscriptome	119	Y
F076754	Metagenome / Metatranscriptome	117	Y
F090471	Metagenome / Metatranscriptome	108	Y
F094233	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_100000031070	F055025	N/A	MSLIESNLKSQVVVDICARVKNLGYTTSGHVRLYGEEFEVVSEPFADADGIAVHAKSSKNPKVRVLRLPSTVVQSAKGHKVA
Ga0326728_100000031135	F017549	GGA	MKFLEMISKPGALVSGWTSAILCFSAASGFWLAGARGKAACWLVIGIVEVIAIAWK
Ga0326728_100000031140	F052109	N/A	MDRMARPFAEVVRVKNVSYSGAVLLGVRARICAGQLLDVQHGAQKAQFRIAWASSGEAGIEALSSEPCIWEIALRTKSKTAGTE
Ga0326728_100000031362	F010931	N/A	MAKAYRTDVLGKKKFLEEIQQRSKAHKPERVPCPSPGCACTYEMFGSGPANLVEYTAILQDRVQREHPDHTSEVLSVNEFRKPKR
Ga0326728_100000031457	F090471	AGGA	MGISDSYRITFFENVRVADTMLPAGDYKILHVMEGQDHIMVFRQVGVKNPVEVRAKCTLVALNEPVAQSQKVFELNGSNERVLKALLFKGDHAKHVF
Ga0326728_100000031519	F000036	GGA	MGFRGWAGMENKDVFWMACDSTEQLRAEYGPFHTREEAEREARKLGFGYLLRYEHILDEEEEIQEVRCVFVELQDCHGKKPGVTFHTRCASCGESATHEMGWQAEVWADIHEFEHTRHKVRLFEHSRGDGLREIADWRSAA
Ga0326728_100000031576	F007434	AGGAGG	MQFRLEKDELDFLANVLLEQDPGPYESLLDKILARDLRLDAGELEQAAELLTSKKSSLKNQIAREPAVPVMAELQRQLALLERVLEMVKEACVMF
Ga0326728_100000031624	F002927	N/A	MSPASSPRLSFGLRGSAALIVAVAVVAILLITLPGYRLFFGISVLIGLVIAGGLALWYRHHPVKEAEEQNKRPLGL
Ga0326728_100000031630	F000525	N/A	MGIVKITLVSFLLCLLSSCSPRDFLTRRLAADLISASDAFKTPQTFWLTTGIVSNKDFTLPESMVLQRRGWIVGNEAKCPVGVEPPPCWDVVLSPLGVDTIRPLITGGSAEAGPLAIQVARREVVAITGISKAGNFADVEFTWHWVSLNKIGDALYDSGVRYRSTVAFRGYDDGWRVVTSSVRSNQPLDEALRNAEPTAP
Ga0326728_100000031711	F040251	GGAGG	MQSELSTGDFVEIALLTSSGPIHAMAEMLQPVRRAKAQSACLQPFRFVALGDQDHQKLNTVLDSACDRGPSVRF
Ga0326728_100000031761	F000743	N/A	MTREEKKRLSAVVRATEYLFLENIALKLVLEHRQVTNWQKLLDHLLTDKEIMAGVHLKFSDLYRELEASKDPSSALNVFLGGLPSAKKPH
Ga0326728_100000031820	F026659	N/A	MAEKKTARSNCRFRVQGNDAKPLLVVQLFQDTIPALRGASFGFDLLGGTRIEAAKKLAGMLNEHILDMFVTTGEKSV
Ga0326728_100000031831	F006598	GGAG	MNYCFYPAHSCVATQEDRDSARGGIDTFAGAVRVFAGIALLTCILAAQERVNAAGVRSQFNIQAQTACETEMLREMGAREVFSGKGYEVLAEVAQAYGRPIPHMYILPGSLNMAYIAASTAVDGRGKIVVGQQAIELFDAFSLKGFLGHEMAHLVSDSAAQGCNDYILRDPQMEAEADALAARTLGTGPVKAFLQRALALSQGQNWDARRRLEALQ
Ga0326728_10000003248	F000526	AGGAGG	MDGNIVGLAAVVLFFGIPLGAMYTFYRVRKLKTEERLAALARGASIPMEPELNEAARSRRWGVLLTAASLGFMACCALVGRAEPDAWTAAAFGIIPLSVGVGFFVDFALIRRDAKQIG
Ga0326728_1000000330	F024629	GGAGG	MKSKYKDLQFSVDQLRSMLKRDGLEPEQISALEDAAAELIGLGRKPNPSRREIFRVVRKVAEAVIRSIVS
Ga0326728_10000003382	F076754	AGGAG	MKTLVAVLSCVAVSLFLGPQVTYSQSSLESDVDNARIIEMTHKGLGDDVIVARIKAGATKFSLSDDDLANLKKAGVSDPVVAAMIQSTQLTSPKVEIDGNPVEVRTIGEQKVGGRLGHLATMGIKSVKNKAYLQGQHASVITSRKPVIDIQLPANDNIDNYIIVEMDDKGDRREIEMGSIGGTVGEKVGIRADRIVRTSATPVGGRRFRISTVKELKKGEYILYSVGSADFPHGVYGQGYDFTVQ
Ga0326728_1000000339	F066959	GGAG	MKYLLAILLVCTVAQAENLVATSAATAPLPDAPASRPFWTFETKLDFGALAGLVAADGITTQRGLSQGYHEANPLMRPFVTHGAGGEAVGSALGFGAGLGTVYLLHRTHHYKAERIAMRLIVGGEGAVVGHNLAVLH
Ga0326728_10000003391	F003498	N/A	MATSSRSYQRQLLEWFPFYVQRFVGDVRYRALKDYQQAWFLNLLFASWQSERPGYLPDDGQLWRLANARTRQFFEKEADAVLCMFEREGSTTDGVCWIYHQALVEIYDEQVLKFHKKRQRYSKSTIDNGTSYLDFEGTLNKKENGKEECAIHPGSGLTQWGTCWGCYAEKHASAAG
Ga0326728_10000003464	F000477	GGA	MASRDAMTKKFTPEIDAQLYDEFVAVAEQNGQTKRHVLEQALRFYLHNVVPSQHLVRAEVMDAFEQSVVRNRDLLQRLAK
Ga0326728_10000003494	F094233	AGGA	MKRYLLLLVVLCSISVLAAAENRPKREGTIVRMRMADCLAPQHVFMNAMSGSAAPAGEQCPEYVMVTDSVVYVIVGKSSDQLVPLAESTFFRMQNNEVLIRIDDARKESRFHVKEMVLRAEWDRNQQIADAVALAAMHRHLEGAVMVDAHQ
Ga0326728_10000003505	F053983	AGGAGG	MTPQSTIKRLVSVILFVGLSTALLYGAPQMGDDKAPAQAMSAQSMSAQTITGCLKKGTEPGGFFLISNENKHWELYPEAGVDLAKHVGHTVSVTGTVAHRTAAQEEKSQPSEKKEMGKLAHADLDVSSVKHISATCSK
Ga0326728_10000003567	F000482	N/A	MQASKIHIAIALCAGGLLLAVFLGYLNWLSNQGPVLSRSDERDPLTNMPVSITMNPLRDRAIERTASAFINEMHEGNCRQLLADWEKDYRRKRAQFICDSETQHPLISWNIVEWEDAPPLVILHYKGERYSTPARNATYKDLFSVTEEKKAGGYVVTKYDSFY
Ga0326728_10000003676	F001499	AGGAG	VEHVDAQVLKRFDTRSSRPCEFCRDLDPQFTRRNPIDQMVAATRKATASAHLTEDGYVRHRILELRRMTARVPVNAA
Ga0326728_10000003690	F000439	GGAGG	MEAGRNGHEGPRGVSVLNDMSVHQVVKAAHDELRQLLQQRAEIMKRIGTVKQTITGLADLFGEEALGDELLDLIDRKPNGRQPGFTKACRRVLMERARPMGARDVCAELERQAPAILARHKDPLASVTTVLNRLVDYGEARSLSNDRGRRVWEWVSEGDQAAGQNAMRDRVPA
Ga0326728_10000003744	F000174	AGG	MKNVYEVLRQKELELSRLEKEVEALRVAAPLLSDEKEPMVEAKPTLTTANPQQPIRIPAPVAAQAVNPPGRAAGWEDAAKRWP
Ga0326728_10000003756	F000372	GAG	MPIEAQDAPPNAGSGVARRWTVIASGLLILALALVVIYTGPRAFLSPIALVVVSAIGLAALLFQLRFRRDLPEVRSPLWLNILGVLLAAMALLGDRARLTQSALDAIAFGAVLCFGISGTLILHALRRRGPHQSPTSSD
Ga0326728_10000003836	F074490	GAGG	MGKYCYGKGRRRIIEQFTNWHGLWILAVLGAFATATLLLYILGYLHFDGD
Ga0326728_10000003886	F012173	N/A	MTSILPPASLLSAPFFGEIKKKRVLLVDTSQAKRELRAEVMRKLGMDVDCAADIDEARSWWKAALYDLVLINMDKGPGYRDKFCDEVRGATPPQRLAFLVGGPAYLANSPTMNEELPAPSADDRVMTDFKVAIAAERDDPTQRWGILEASRQISEARSKALARTQAMRAMPAPPRDSEGRASKRGSTAINLDDLLREGLQ
Ga0326728_10000003900	F010868	GAG	MPTQENPKPAPPSAAEHVAAASQLLKNLQTKLGDHPEIREAVDKLEMALAILGVQTGGLL
Ga0326728_10000003901	F002363	N/A	MNLLGICVLVQISLAFGVAGLLWPEKLRPIFDVLMFPWAASYRLVRAHCIVAIAVSVLIIAKLFAIGF
Ga0326728_10000003927	F001303	GAG	VRIEPGGRKDLMDRENQESMEEIQLRILRVTDDLRIIQSELNCAAMQAPTDPELLEALSEPAHMESLNVLKSVLDQMRHFLWFYMQVVTSDSEMGEKFRQTFRLETPVARAPEVDQQFQSATDAIMLRYLADNRGRKPN