Scaffold Ga0326728_10000002

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000002
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2463942
• Total Scaffold Genes: 2574
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2085 (81.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003063	Metagenome / Metatranscriptome	509	Y
F006925	Metagenome	362	Y
F032903	Metagenome	178	Y
F038000	Metagenome	167	Y
F053661	Metagenome	141	Y
F066899	Metagenome / Metatranscriptome	126	Y
F071201	Metagenome	122	Y
F079538	Metagenome / Metatranscriptome	115	Y
F084412	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_100000021643	F084412	AGG	MTKDVTLDPQPVLGALHYALMCLEKGDTAGAKHGIHEALFRMGFTEDNLRITPKERKELERQKARLYAKLAKDTEMVAARQKHYAAIAYDERKISDVDAVKAKSEGEIARVMDDKSESDICREFRAYRTSISNLFEDRAEKYRKLEEMHLEKAKTMRA
Ga0326728_100000021647	F071201	N/A	MPVPKPKANESERDFISRCEKFMHEENKSKPESEKRSNEQISAICYSEWRERKK
Ga0326728_100000021705	F003063	GGAG	LVLEAGNVFKIAMAYSRVREFLTSKGWEFRGKDEEMEMDSFRNKKTGKKLFVEDISEDFPVTFLMGELSLPEFSNIASELTPEIQLLEVDSSWEGKPTTIVVAMTEEQVRSMFGRRTKMRKLAVQRARYAR
Ga0326728_100000021711	F079538	GAGG	LLSAKDVRKCRNSSELNDFIEKYIAERNSPNESFNSTYWNLYEEWKKTLKNKPLRR
Ga0326728_100000022407	F038000	N/A	MQNLLNPCLEDNCYAEGEIIGDHRCENCGKMFYTRYVQYTGKCLCPECRGKSGAAKKEKEYGEAKEYWETRKKEVRDS
Ga0326728_10000002552	F032903	GGA	LGWVFSQMSDEAVCLERKLLVPDATVEDVALACQKAFKEMGLRVMKTERTKDGSTSELAGEGALVPLILRTLLYPFSIQQYVEAAQRSGVHVVISPSKEGTIIYSCGLALDEITGKPAKTLSEDDMDDITNTLEALNFENKFIKKIKELFPKTKEIE
Ga0326728_10000002678	F053661	GGA	LEATREEVGKVVDWKDYYQTNKGRLLGIGGILIVVGLVVYFARGQEVALVLPVVGIVLFIAGVLYKPRKKKTENITSDSP
Ga0326728_10000002780	F006925	AGG	MVEVDILENFGREAEQRKKWLKQWQLLGTRILRFPKWMQAIILEDVNTAIENRVATMEMILRSKKQT
Ga0326728_1000000293	F066899	GAGG	MNQKDTAAKVPVDMEKCLRISKKILELLQKKTKNSAEAYLTVRLLGIFLEEKLKFKLASDQEEELRKMWRKDQNMPEKSEGLN