Scaffold Ga0326728_10000001

Overview

Basic Information

• Taxon OID: 3300033402
• Scaffold ID: Ga0326728_10000001
• Source Dataset Name: Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2540896
• Total Scaffold Genes: 2197
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1649 (75.06%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil → Lab Enriched Peat Soil Microbial Communities From Two Peatlands Near Ithaca, Ny, United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 42.5488
  • Long. (^o): -76.2662
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011911	Metagenome / Metatranscriptome	285	Y
F062925	Metagenome / Metatranscriptome	130	Y
F094769	Metagenome / Metatranscriptome	105	Y
F102359	Metagenome	101	Y
F102917	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326728_100000011004	F094769	AGGAGG	MFDARQSNLQDVTAYAPVRIALLGLLRLIFGLLVAVPAGLLIWIGPNGEAGAPHNPGDMPAWWMFFIGLVLCFVAFSIAAGGIGRIVSAFAKDCYFRAGSEGIAIRFPVQGWFGRFRLTEYNFRWSEIRQLVHFTHSLNFTPISRELRIELEDGKTVVIQRHYFSANVKSLQQQLLTIRASVGR
Ga0326728_100000011350	F102917	GGAG	MRIPGIRFGVTRIGAAISMVFLSFALLAGTPTIGQTTTQKPGKFPLWNFDEVKGTCRAKGRLQDKEYCESKMMDQIIAQGKDAIPILISQLTDTRATPEPIYDYWNETTAGDIAYFILTDLFTDASWTTFTMPGLDALKEHCSKNLPAEACWRGFLKKHGRKFIQDQWLAAWNANKDRVYWDEQARCFRVSVKKEK
Ga0326728_100000012126	F011911	AGGAG	MEPTKTDPAIADDVLHLGGSKLTPEEIAKALAHHKRHHSGDQPQQAAAKTGSGKKGKQGK
Ga0326728_100000012184	F102359	AGGAGG	MVSRRTLSLACFCLFAALLFSLALPMAAQTADEGTAKMVSLMQANNYPFITTRSPTVWVIHFTGTHLKDTKVVLALDTTSYQMVIFVTVVEKRRMPVTTDFLHTLLKFDHEYDRVKVGLDADDDLSVRIDAPLRLADAQEFRDIVTQIKNSSDEIYGKIEPQLLP
Ga0326728_10000001235	F062925	AGGAG	MTIETTAAKQAIHDKLESQIKTAEAKLATLKARAEAAKANAEIKAITDLLPRKEVLHRKLQELKKSGEDRWEVVKNDLMVLIADFEKSVKEIEAKVKAH