NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318519_11006980

Scaffold Ga0318519_11006980


Overview

Basic Information
Taxon OID3300033290 Open in IMG/M
Scaffold IDGa0318519_11006980 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)517
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003594Metagenome / Metatranscriptome478Y
F004406Metagenome / Metatranscriptome439Y

Sequences

Protein IDFamilyRBSSequence
Ga0318519_110069801F003594AGGMKRREFITLLGGAAAGWPLAAVAESMTQPIQAATANPPQIEVVRVKPIDPAAPKLRFQLSDGSVDLMKSFRLDGFDGVGGAWKIPSTD
Ga0318519_110069802F004406N/APKPDRRRALELLAASPDGCTQALMFANGFTAELLVELVRTGLASAHAERMVADGKMMETARVKISEAGWQTLAGDAINIRAKST

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