NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318519_10278470

Scaffold Ga0318519_10278470


Overview

Basic Information
Taxon OID3300033290 Open in IMG/M
Scaffold IDGa0318519_10278470 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)974
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000315Metagenome / Metatranscriptome1319Y
F054487Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0318519_102784702F054487GGAGGMRKMICPALTAAAACSLFAACAQPSAPIQPLPSGPTLGEVADYARAQEQFRAAQASGDGDAVMQATNTFSLVAGEVLSRRDPTLFDAQVVCERYRVAGWHNQRDMRPTYEPQFVRDCERIDWRYNQATAAIRRDLEARIAAS
Ga0318519_102784703F000315N/ARLIVWCKTCRHQVEPDPAEMVARYGADTPVLVWRDRLVCSGCGGRQVDMVVTGTERR

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