Scaffold Ga0334722_10300220

Overview

Basic Information

• Taxon OID: 3300033233
• Scaffold ID: Ga0334722_10300220
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1171
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5107
  • Long. (^o): -110.3566
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006986	Metagenome	360	Y
F021759	Metagenome	217	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334722_103002201	F006986	N/A	VTAVLVIWHDAHSGSESWIPISSLDTEPAVVNTVGFLLPTSDGGKPEHVTVYQSRNEDAIDHVLHIPVKMVVSIKVLMDLEINTPDR
Ga0334722_103002202	F021759	AGAAGG	MDAGLAVVFAAVVAALGGIVVAIIQMRNLAEENRTDHAMVQKRLDTVIDMVGKTSAKLTSHLDWHINSSTKEPRKDPRVKQVATRKKK