Scaffold Ga0334722_10087204

Overview

Basic Information

• Taxon OID: 3300033233
• Scaffold ID: Ga0334722_10087204
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2386
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5107
  • Long. (^o): -110.3566
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016936	Metagenome / Metatranscriptome	243	Y
F029363	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334722_100872041	F016936	GGAGG	MNLELIHAELVRIREALEARPFAAGAPPAKPAAPRSEEVPMPTAVIDDAGNVQVHFGKNKGVALSSLGDRSVAWYAQEPEPRLGNNGKPFPPRPEDVLLRNAARTLIHQKRGTLPSAAVPTAPSVNEEHVPF
Ga0334722_100872042	F029363	AGGA	MENDDDNKMLWAAKDLRTLTSCKAEIAISRRVTIKPNAIKEGWDYQITFGDILNRGAWRWECAQAETLEAVVEMTKAQIKAQGDEKARELLQLQDAAAKLGLKLVEVTP