Scaffold Ga0334722_10086409

Overview

Basic Information

• Taxon OID: 3300033233
• Scaffold ID: Ga0334722_10086409
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2398
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5107
  • Long. (^o): -110.3566
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F002433	Metagenome / Metatranscriptome	559	Y
F005503	Metagenome / Metatranscriptome	398	Y
F010982	Metagenome	296	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334722_100864093	F010982	GGAG	MIMVRLSREDEVIAHSVGLDRESRYGSNPKFQGNKGNFHNAVVIHSEAVGAEMAVAKYFGVADFVPTVNTFKNEPDVYWNGIAIEVKQTPHKRGHLIISEDDRDTDIAVLVVGESPTYYIIGWIPVGVAKRPRFQSAQGGYWVSQINLQPIETLRKSIHANT
Ga0334722_100864094	F000403	GGA	MSGPIEIINPRTMSCTLMENGVIIATYKVEQCDKCSRLVKFDEFGYQKGFGNEKIIWFCSECR
Ga0334722_100864096	F005503	GGAG	MTTSEIGLFVLMAIACILWAICSYAVGYREGHKDGYQRGKAVGRHASSKAVR
Ga0334722_100864097	F002433	N/A	VSVGEWTAVGGLVLAVLTAIYSSMRFMVKSIMRELQPNGGNSLKDQVSRIEQRLDTLILELAIKK