Scaffold Ga0334722_10053031

Overview

Basic Information

• Taxon OID: 3300033233
• Scaffold ID: Ga0334722_10053031
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3191
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5107
  • Long. (^o): -110.3566
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003213	Metagenome	500	Y
F028783	Metagenome	190	Y
F032279	Metagenome	180	Y
F055728	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0334722_100530313	F055728	GAGG	MRRGYDPHYGSREQLRDSAEHGMKLARERDALKTENAALLDEITELKALIAYLSEGE
Ga0334722_100530315	F032279	GAGG	MPLIIKIIIGFALSAIGVGLSQIPEPVFVTQTDTPYEAVGGYGQFIADVYRYVPPVTTTTPPAPVYRHGNCSWLPALALKAGWQADQITQLTLIALRESGCCPYRAGGDTVDKNCNITGIADYSHRSDSGLMQINGVHWLPTHKNYDGLICKQMRICTQEPLLDPLTNLQAARLIYSKVGWSAWSICHRNNTCN
Ga0334722_100530316	F028783	N/A	LKPYRVLSAPIVKSPLQGTDEFIRQVVKRAGGCLWNNGSWIIRDIRTRPGTISNHARGLAIDFSYRKMTDKGIVNGRAQALTFVNKLLKNADALGVELVIDYHENKSWRCDRATWIKGKWTGGDWFHIEISLAMANNENAIKQAFLTVFKDMPKTV
Ga0334722_100530317	F003213	N/A	MTSKKINKAHRQISDQTTKGGLLGVMIYTLSRNNVDPVLIGLLVPLAASVLAWISTKIGDPDLACLFIPDDKKDI