Scaffold Ga0334722_10048547

Overview

Basic Information

• Taxon OID: 3300033233
• Scaffold ID: Ga0334722_10048547
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3367
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5107
  • Long. (^o): -110.3566
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015867	Metagenome / Metatranscriptome	251	N
F018713	Metagenome	233	N
F024743	Metagenome / Metatranscriptome	204	N
F033034	Metagenome / Metatranscriptome	178	Y
F043930	Metagenome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0334722_100485471	F043930	N/A	MMNNLEKARWRNILQKAAKANRLFKKGYIVFDHHGTRFNGFKFGNGMLYEGSENYRSVWISKDKLWSEYFHTPIKEFNAKRFDK
Ga0334722_1004854711	F033034	N/A	MKVAKLTRKAQDIVNQIMSADAVDIDHGSIGERIAYGNMHLTGEGLECNVNVDGDIGEMIISNESLNEATIVDGIVNIDSDHIKANHFGDMTFTLYKLSKINAV
Ga0334722_100485474	F015867	GAG	MKYKVNYYDYDSDSYLEKDLYWMASYRGSFDFVPVDDGPKENWKGFTISGSGVNVFYNDKGLNITVDGFQEMKSGGYGKTTTFIQGVI
Ga0334722_100485475	F018713	N/A	MSPDPNLWAEIPQEVKDAAILLGNYFKKQGLDSWTLYDVSSRQNFNGAYNQGLDTAISLVSECSDMETIICGLENSKKQFSNKGGDGIDYTKSF
Ga0334722_100485476	F024743	AGG	MNEVQLYNLYSQDSSAYNEGKKAQDLIIIMNVLHLRLEHNMPLHKIAKRCNIKVNKVKLILFNYESRS